RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 RNASE6Q93091 150 aaKnown RBP11.6□□□□□ -0.55
VPS33B-208ENST00000574755 CIB3Q96Q77 187 aaPredicted RBP11.6□□□□□ -0.55
VPS33B-208ENST00000574755 DYNLRB1Q9NP97 96 aa11.6□□□□□ -0.55
VPS33B-208ENST00000574755 IDI2-AS1Q9NZ38 188 aa11.6□□□□□ -0.55
VPS33B-208ENST00000574755 PKDREJQ9NTG1 2253 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 SAA2-SAA4A0A096LPE2 208 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 SAA2P0DJI9 122 aaPredicted RBP11.59□□□□□ -0.55
VPS33B-208ENST00000574755 GNG10P50151 68 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 OR2B8PP59922 312 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 ERVK-16P61578 105 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 KLRB1Q12918 225 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 LRRC75BQ2VPJ9 315 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 PRAMEF5Q5TYX0 476 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 DMRTC2Q8IXT2 367 aaPredicted RBP11.59□□□□□ -0.55
VPS33B-208ENST00000574755 SLC25A10Q9UBX3 287 aaPredicted RBP11.59□□□□□ -0.55
VPS33B-208ENST00000574755 KPTNQ9Y664 436 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 RELNP78509 3460 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 PPIAL4EA0A075B759 164 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 UBE2L5PA0A1B0GUS4 154 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 hADV38S2A0JD32 116 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 E7EQL1 145 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 PPIAL4DF5H284 164 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 RBFOX2O43251 390 aaKnown RBP eCLIP11.59□□□□□ -0.55
VPS33B-208ENST00000574755 OR9G9P0C7N8 305 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 PPIAL4FP0DN26 164 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 CA7P43166 264 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 CCL20P78556 96 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 SPSB3Q6PJ21 355 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 DPPA3Q6W0C5 159 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 C1orf229Q6ZS94 237 aaPredicted RBP11.59□□□□□ -0.55
VPS33B-208ENST00000574755 VKORC1L1Q8N0U8 176 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 LYG1Q8N1E2 194 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 SFT2D1Q8WV19 159 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 OR4C12Q96R67 309 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 QTRT1Q9BXR0 403 aaKnown RBP11.59□□□□□ -0.55
VPS33B-208ENST00000574755 WDR61Q9GZS3 305 aaKnown RBP11.59□□□□□ -0.55
VPS33B-208ENST00000574755 PPIAL4AQ9Y536 164 aa11.59□□□□□ -0.55
VPS33B-208ENST00000574755 BTBD17A6NE02 478 aa11.58□□□□□ -0.56
VPS33B-208ENST00000574755 FAM90A27PA6NNH2 459 aa11.58□□□□□ -0.56
VPS33B-208ENST00000574755 TMEM178BH3BS89 294 aa11.58□□□□□ -0.56
VPS33B-208ENST00000574755 IFNA17P01571 189 aa11.58□□□□□ -0.56
VPS33B-208ENST00000574755 CORO2AQ92828 525 aa11.58□□□□□ -0.56
VPS33B-208ENST00000574755 PSMG3Q9BT73 122 aaPredicted RBP11.58□□□□□ -0.56
VPS33B-208ENST00000574755 GAB2Q9UQC2 676 aa11.58□□□□□ -0.56
VPS33B-208ENST00000574755 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.57□□□□□ -0.56
VPS33B-208ENST00000574755 CCL21O00585 134 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 PPIHO43447 177 aaKnown RBP11.57□□□□□ -0.56
VPS33B-208ENST00000574755 MMP23AO75900 390 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 CD3EP07766 207 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 NQO2P16083 231 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 KIR2DS2P43631 304 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 CBLN2Q8IUK8 224 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.57□□□□□ -0.56
VPS33B-208ENST00000574755 OR10P1Q8NGE3 313 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 OR4A16Q8NH70 328 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 OR4S2Q8NH73 311 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 DDB2Q92466 427 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 MS4A5Q9H3V2 200 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 TMEM106BQ9NUM4 274 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 LINC00312Q9Y6C7 94 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 LOC105371267A0A1B0GV96 52 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 OR8U8P0C7N1 319 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 RAB2AP61019 212 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 MRPS11P82912 194 aaKnown RBP11.57□□□□□ -0.56
VPS33B-208ENST00000574755 ZNF439Q8NDP4 499 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 TAF15Q92804 592 aaKnown RBP eCLIP11.57□□□□□ -0.56
VPS33B-208ENST00000574755 RARRES2Q99969 163 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 LINC00574Q9H8X3 128 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 KIAA1456Q9P272 454 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 NDRG3Q9UGV2 375 aa11.57□□□□□ -0.56
VPS33B-208ENST00000574755 RBFOX3A6NFN3 312 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 FAM90A9PA6NNJ1 464 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 RPS16P62249 146 aaKnown RBP11.56□□□□□ -0.56
VPS33B-208ENST00000574755 RPL31P62899 125 aaKnown RBP11.56□□□□□ -0.56
VPS33B-208ENST00000574755 TMEM30BQ3MIR4 351 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 CLRN3Q8NCR9 226 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 LINC01560Q8TB33 94 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 PINX1Q96BK5 328 aaKnown RBP11.56□□□□□ -0.56
VPS33B-208ENST00000574755 PARD6GQ9BYG4 376 aaPredicted RBP11.56□□□□□ -0.56
VPS33B-208ENST00000574755 SLC35B3Q9H1N7 401 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 GAL3ST2Q9H3Q3 398 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 RPRMQ9NS64 109 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 RPUSD1Q9UJJ7 312 aaKnown RBP11.56□□□□□ -0.56
VPS33B-208ENST00000574755 A0A1B0GW64 132 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 HBE1P02100 147 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 CHRNB4P30926 498 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 APOBEC3AP31941 199 aaPredicted RBP11.56□□□□□ -0.56
VPS33B-208ENST00000574755 THBS3P49746 956 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 SERF2P84101 59 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 HNF4GQ14541 408 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 ST6GALNAC3Q8NDV1 305 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 ZNF251Q9BRH9 671 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 VSIRQ9H7M9 311 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 TMEM140Q9NV12 185 aa11.56□□□□□ -0.56
VPS33B-208ENST00000574755 PMS2P5A8MQ11 134 aa11.55□□□□□ -0.56
VPS33B-208ENST00000574755 ERVFRD-1P60508 538 aa11.55□□□□□ -0.56
VPS33B-208ENST00000574755 MEF2CQ06413 473 aaPredicted RBP11.55□□□□□ -0.56
VPS33B-208ENST00000574755 HAGHQ16775 308 aa11.55□□□□□ -0.56
VPS33B-208ENST00000574755 ATP6V1FQ16864 119 aa11.55□□□□□ -0.56
VPS33B-208ENST00000574755 AKIRIN2Q53H80 203 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms