RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ZNF101Q8IZC7 436 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 ZCCHC24Q8N2G6 241 aaKnown RBP4.85□□□□□ -1.63
VPS53-212ENST00000572259 CIARTQ8N365 385 aaPredicted RBP4.85□□□□□ -1.63
VPS53-212ENST00000572259 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.85□□□□□ -1.63
VPS53-212ENST00000572259 OR8D4Q8NGM9 314 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 OR9Q1Q8NGQ5 310 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 OR13G1Q8NGZ3 307 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 OR2G2Q8NGZ5 317 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 GATAD1Q8WUU5 269 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 CMBLQ96DG6 245 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 ADTRPQ96IZ2 230 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 TBX15Q96SF7 602 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 APOL4Q9BPW4 351 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 AGMATQ9BSE5 352 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 SLC22A4Q9H015 551 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 TVP23BQ9NYZ1 205 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 ING4Q9UNL4 249 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 GOLT1BQ9Y3E0 138 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 LHFPL6Q9Y693 200 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 TMEM14AQ9Y6G1 99 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 NSD1Q96L73 2696 aaPredicted RBP4.85□□□□□ -1.63
VPS53-212ENST00000572259 ABCA2Q9BZC7 2435 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 IGLV5-45A0A087WSX0 123 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 IGHV1-69-2A0A0G2JMI3 117 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 CLDN25C9JDP6 229 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 F5H768 121 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 J3QLI3 93 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 M0R135 149 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 CD5LO43866 347 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 MPZL2O60487 215 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 LY6HO94772 140 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 GYPBP06028 91 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 IGFBP5P24593 272 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 HTR1FP30939 366 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 GGT2P36268 569 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 SRP9P49458 86 aaKnown RBP4.84□□□□□ -1.63
VPS53-212ENST00000572259 THBS3P49746 956 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 DAPP51397 102 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 AP2S1P53680 142 aaPredicted RBP4.84□□□□□ -1.63
VPS53-212ENST00000572259 HCCSP53701 268 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 PAFAH1B2P68402 229 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 CCL8P80075 99 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 TNFAIP6P98066 277 aaPredicted RBP4.84□□□□□ -1.63
VPS53-212ENST00000572259 ST3GAL4Q11206 333 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 PSG7Q13046 419 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 PTGES3Q15185 160 aaKnown RBP4.84□□□□□ -1.63
VPS53-212ENST00000572259 OR10J3Q5JRS4 329 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 VAX1Q5SQQ9 334 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 FBXW12Q6X9E4 464 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 TMEM179BQ7Z7N9 219 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 ZNF283Q8N7M2 679 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 ZNF114Q8NC26 417 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 OR2AE1Q8NHA4 323 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 NEK7Q8TDX7 302 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 THEM6Q8WUY1 208 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 SLC7A6Q92536 515 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 SLAMF6Q96DU3 332 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 ZNF799Q96GE5 643 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 TMEM80Q96HE8 168 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 Q96MT0 163 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 OR5B12Q96R08 314 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 BPESC1Q9GZL8 116 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 TMEM100Q9NV29 134 aa4.84□□□□□ -1.63
VPS53-212ENST00000572259 FN1P02751 2386 aaKnown RBP4.83□□□□□ -1.64
VPS53-212ENST00000572259 IGHV4-61A0A0C4DH41 118 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 GGT3PA6NGU5 568 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 FAM183AA6NL82 134 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 IQCF6A8MYZ5 107 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 LOC110117498-PIK3R3F6TDL0 507 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 PHYHO14832 338 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 CRXO43186 299 aaPredicted RBP4.83□□□□□ -1.64
VPS53-212ENST00000572259 SNAPINO95295 136 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 IGHV1-46P01743 117 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 IGHV4-59P01825 116 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 CD55P08174 381 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 PVALBP20472 110 aaPredicted RBP4.83□□□□□ -1.64
VPS53-212ENST00000572259 COL8A2P25067 703 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 MPV17P39210 176 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 OR10A3P58181 314 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 CDC42P60953 191 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 RPS27AP62979 156 aaKnown RBP4.83□□□□□ -1.64
VPS53-212ENST00000572259 APOFQ13790 326 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 SPIN3Q5JUX0 258 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 OTPQ5XKR4 325 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 KDM4DQ6B0I6 523 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 OR2T2Q6IF00 324 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 GDPD3Q7L5L3 318 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 FAM19A1Q7Z5A9 133 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 FTMTQ8N4E7 242 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 TEX29Q8N6K0 151 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 MAPK1IP1LQ8NDC0 245 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 OR8G5Q8NG78 346 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 OR2Z1Q8NG97 314 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 OTOSQ8NHW6 89 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 PCNPQ8WW12 178 aaKnown RBP4.83□□□□□ -1.64
VPS53-212ENST00000572259 ASB17Q8WXJ9 295 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 CCL17Q92583 94 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 CREB3L1Q96BA8 519 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 SMIM19Q96E16 107 aa4.83□□□□□ -1.64
VPS53-212ENST00000572259 ZMYND19Q96E35 227 aaPredicted RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms