RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 RGS21Q2M5E4 152 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 LRRC75BQ2VPJ9 315 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 FBLN7Q53RD9 439 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 TMEM128Q5BJH2 165 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 SLC25A42Q86VD7 318 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 THNSL2Q86YJ6 484 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 PDPNQ86YL7 162 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 SIGLECL1Q8N7X8 197 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 TCTEX1D2Q8WW35 142 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 CAPSLQ8WWF8 208 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 SSX3Q99909 188 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 SLC35D1Q9NTN3 355 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 PRELID3BQ9Y3B1 194 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 WASHC3Q9Y3C0 194 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 NUBP2Q9Y5Y2 271 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 ANK3Q12955 4377 aaKnown RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 ARHGAP32A7KAX9 2087 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 DSCAML1Q8TD84 2053 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 TRAV6A0A075B6T7 132 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 TEX13DA0A0J9YY54 714 aaPredicted RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 C3orf85A0A1B0GTC6 90 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 H0Y980 276 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 H3BUX3 64 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 H7C2Y5 167 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 RBFOX2O43251 390 aaKnown RBP eCLIP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 HOXA3O43365 443 aaPredicted RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 RAMP3O60896 148 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 FCGR3BO75015 233 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 IGKV1D-33P01593 117 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 IGKV1-33P01594 117 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 IGHV4-59P01825 116 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 APOA2P02652 100 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 IGKV1-16P04430 117 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 SNRNP70P08621 437 aaKnown RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 H2AFB2P0C5Z0 115 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 FAM106CPP0CH98 169 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 RRASP10301 218 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 AKR1C4P17516 323 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 ANXA7P20073 488 aaKnown RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 KIR2DS2P43631 304 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 TAS2R31P59538 309 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 SUPT4H1P63272 117 aaKnown RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 DHODHQ02127 395 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 PPP1R1AQ13522 171 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 RTL8BQ17RB0 113 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 SP6Q3SY56 376 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 ZNF585BQ52M93 769 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 OR2B11Q5JQS5 317 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 DHRS7BQ6IAN0 325 aaPredicted RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 PLET1Q6UQ28 207 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 SGPP2Q8IWX5 399 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 SPAG16Q8N0X2 631 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 Q8N6K4 173 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 TCTEX1D1Q8N7M0 179 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 CD300LFQ8TDQ1 290 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 SSMEM1Q8WWF3 244 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 WDR89Q96FK6 387 aaPredicted RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 TP53RKQ96S44 253 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 MARVELD1Q9BSK0 173 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 ALX4Q9H161 411 aaPredicted RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 NAA60Q9H7X0 242 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 FAM212BQ9NTI7 297 aaPredicted RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 LIN7CQ9NUP9 197 aaKnown RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 TCF19Q9Y242 345 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 ANK2Q01484 3957 aa6.77□□□□□ -1.33
SF3B3-212ENST00000568539 YLPM1P49750 1951 aaKnown RBP6.77□□□□□ -1.33
SF3B3-212ENST00000568539 A6NDX4 124 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 PEX14O75381 377 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 B3GALNT1O75752 331 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 CRYZL1O95825 349 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 MOSP00540 346 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 OR5AC1P0C628 307 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 VSIG10L2P0DP72 767 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 UCP1P25874 307 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 RAG2P55895 527 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 UBE2MP61081 183 aaKnown RBP6.76□□□□□ -1.33
SF3B3-212ENST00000568539 CBX3Q13185 183 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 HNF4GQ14541 408 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 OXA1LQ15070 435 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 TMEM177Q53S58 311 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 CCBE1Q6UXH8 406 aaPredicted RBP6.76□□□□□ -1.33
SF3B3-212ENST00000568539 RBMS3Q6XE24 437 aaKnown RBP6.76□□□□□ -1.33
SF3B3-212ENST00000568539 PRIMA1Q86XR5 153 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 OR4C13Q8NGP0 309 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 OR2T10Q8NGZ9 312 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 OR4S2Q8NH73 311 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 OR5R1Q8NH85 324 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 GLYATL2Q8WU03 294 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 FLYWCH2Q96CP2 140 aaKnown RBP6.76□□□□□ -1.33
SF3B3-212ENST00000568539 ANAPC16Q96DE5 110 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 GALNT14Q96FL9 552 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 RITA1Q96K30 269 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 RNF5Q99942 180 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 TMEM222Q9H0R3 208 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 PLEKHA2Q9HB19 425 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 KCNIP3Q9Y2W7 256 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 POMT1Q9Y6A1 747 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 CUBNO60494 3623 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 MXRA5Q9NR99 2828 aa6.76□□□□□ -1.33
SF3B3-212ENST00000568539 CSPG4Q6UVK1 2322 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms