RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 KLF5Q13887 457 aaPredicted RBP12.31□□□□□ -0.44
CLN3-229ENST00000567963 MRGPRG-AS1Q2M3A8 158 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 ZNF367Q7RTV3 350 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 HAPLN4Q86UW8 402 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 ANKRD13BQ86YJ7 626 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 Q8N1Y9 231 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 MUC7Q8TAX7 377 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 CENPOQ9BU64 300 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 RSRP1Q9BUV0 290 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 ZMAT4Q9H898 229 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 RBM7Q9Y580 266 aaKnown RBP12.31□□□□□ -0.44
CLN3-229ENST00000567963 ANKRD34BA5PLL1 514 aa12.3□□□□□ -0.44
CLN3-229ENST00000567963 RRASP10301 218 aa12.3□□□□□ -0.44
CLN3-229ENST00000567963 RAB3BP20337 219 aa12.3□□□□□ -0.44
CLN3-229ENST00000567963 RTL8BQ17RB0 113 aa12.3□□□□□ -0.44
CLN3-229ENST00000567963 CASC10Q5T4H9 136 aa12.3□□□□□ -0.44
CLN3-229ENST00000567963 DDB2Q92466 427 aa12.3□□□□□ -0.44
CLN3-229ENST00000567963 GINS4Q9BRT9 223 aa12.3□□□□□ -0.44
CLN3-229ENST00000567963 TINAGL1Q9GZM7 467 aaPredicted RBP12.3□□□□□ -0.44
CLN3-229ENST00000567963 NDUFB11Q9NX14 153 aa12.3□□□□□ -0.44
CLN3-229ENST00000567963 A0A0B4J203 849 aa12.29□□□□□ -0.44
CLN3-229ENST00000567963 TRDV1A0A1B0GX56 115 aa12.29□□□□□ -0.44
CLN3-229ENST00000567963 METTL21EPA6NDL7 271 aa12.29□□□□□ -0.44
CLN3-229ENST00000567963 IGHV4-30-4P0DP06 118 aa12.29□□□□□ -0.44
CLN3-229ENST00000567963 MYL9P24844 172 aa12.29□□□□□ -0.44
CLN3-229ENST00000567963 DUTP33316 252 aaKnown RBP12.29□□□□□ -0.44
CLN3-229ENST00000567963 ARFRP1Q13795 201 aa12.29□□□□□ -0.44
CLN3-229ENST00000567963 Q6ZS49 121 aa12.29□□□□□ -0.44
CLN3-229ENST00000567963 H1FOOQ8IZA3 346 aaPredicted RBP12.29□□□□□ -0.44
CLN3-229ENST00000567963 TEX45Q8NA69 505 aa12.29□□□□□ -0.44
CLN3-229ENST00000567963 CNBD2Q96M20 576 aa12.29□□□□□ -0.44
CLN3-229ENST00000567963 BLOC1S6Q9UL45 172 aa12.29□□□□□ -0.44
CLN3-229ENST00000567963 IGKV1D-8A0A087WSZ0 117 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 MSGN1A6NI15 193 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 LINC00473A8K010 186 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 A8MZ25 164 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 AADACP22760 399 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 TALDO1P37837 337 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 DEFA5Q01523 94 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 ZNF343Q6P1L6 599 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 IL34Q6ZMJ4 242 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 NR2C2APQ86WQ0 139 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 OR9G4Q8NGQ1 327 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 USMG5Q96IX5 58 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 ADTRPQ96IZ2 230 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 PHB2Q99623 299 aa12.28□□□□□ -0.44
CLN3-229ENST00000567963 PEF1Q9UBV8 284 aaKnown RBP12.28□□□□□ -0.44
CLN3-229ENST00000567963 ELF5Q9UKW6 265 aaPredicted RBP12.28□□□□□ -0.44
CLN3-229ENST00000567963 APELAP0DMC3 54 aa12.27□□□□□ -0.44
CLN3-229ENST00000567963 GALP22466 123 aa12.27□□□□□ -0.44
CLN3-229ENST00000567963 SYNJ2BPP57105 145 aa12.27□□□□□ -0.44
CLN3-229ENST00000567963 UBE2KP61086 200 aa12.27□□□□□ -0.44
CLN3-229ENST00000567963 DYRK1AQ13627 763 aa12.27□□□□□ -0.44
CLN3-229ENST00000567963 VMA21Q3ZAQ7 101 aa12.27□□□□□ -0.44
CLN3-229ENST00000567963 TM2D3Q9BRN9 247 aa12.27□□□□□ -0.44
CLN3-229ENST00000567963 ATG5Q9H1Y0 275 aa12.27□□□□□ -0.44
CLN3-229ENST00000567963 C19orf73Q9NVV2 129 aa12.27□□□□□ -0.44
CLN3-229ENST00000567963 COA4Q9NYJ1 87 aa12.27□□□□□ -0.44
CLN3-229ENST00000567963 RBMXL2O75526 392 aaKnown RBP12.27□□□□□ -0.45
CLN3-229ENST00000567963 CRYZL1O95825 349 aa12.27□□□□□ -0.45
CLN3-229ENST00000567963 TRBV12-3P01733 135 aa12.27□□□□□ -0.45
CLN3-229ENST00000567963 ARL6IP1Q15041 203 aa12.27□□□□□ -0.45
CLN3-229ENST00000567963 TNXAQ16473 311 aa12.27□□□□□ -0.45
CLN3-229ENST00000567963 PRSS8Q16651 343 aa12.27□□□□□ -0.45
CLN3-229ENST00000567963 C22orf42Q6IC83 251 aa12.27□□□□□ -0.45
CLN3-229ENST00000567963 IDO2Q6ZQW0 420 aa12.27□□□□□ -0.45
CLN3-229ENST00000567963 ADAD2Q8NCV1 583 aaKnown RBP12.27□□□□□ -0.45
CLN3-229ENST00000567963 OSR1Q8TAX0 266 aaPredicted RBP12.27□□□□□ -0.45
CLN3-229ENST00000567963 TNCP24821 2201 aa12.26□□□□□ -0.45
CLN3-229ENST00000567963 H0Y980 276 aa12.26□□□□□ -0.45
CLN3-229ENST00000567963 DTYMKP23919 212 aa12.26□□□□□ -0.45
CLN3-229ENST00000567963 TATDN3Q17R31 274 aa12.26□□□□□ -0.45
CLN3-229ENST00000567963 CDNFQ49AH0 187 aa12.26□□□□□ -0.45
CLN3-229ENST00000567963 SRSF12Q8WXF0 261 aaKnown RBP12.26□□□□□ -0.45
CLN3-229ENST00000567963 CITED4Q96RK1 184 aa12.26□□□□□ -0.45
CLN3-229ENST00000567963 Q9H521 79 aa12.26□□□□□ -0.45
CLN3-229ENST00000567963 ADAM30Q9UKF2 790 aa12.26□□□□□ -0.45
CLN3-229ENST00000567963 CSN3P07498 182 aa12.25□□□□□ -0.45
CLN3-229ENST00000567963 OR9G9P0C7N8 305 aa12.25□□□□□ -0.45
CLN3-229ENST00000567963 SGPP2Q8IWX5 399 aa12.25□□□□□ -0.45
CLN3-229ENST00000567963 ZNF645Q8N7E2 425 aa12.25□□□□□ -0.45
CLN3-229ENST00000567963 ACOT12Q8WYK0 555 aa12.25□□□□□ -0.45
CLN3-229ENST00000567963 ST6GALNAC5Q9BVH7 336 aa12.25□□□□□ -0.45
CLN3-229ENST00000567963 SIGLEC8Q9NYZ4 499 aa12.25□□□□□ -0.45
CLN3-229ENST00000567963 CSMD3Q7Z407 3707 aa12.25□□□□□ -0.45
CLN3-229ENST00000567963 SMIM30A4D0T7 59 aa12.24□□□□□ -0.45
CLN3-229ENST00000567963 J3QRK9 145 aa12.24□□□□□ -0.45
CLN3-229ENST00000567963 CTXN2P0C2S0 81 aa12.24□□□□□ -0.45
CLN3-229ENST00000567963 LYL1P12980 280 aa12.24□□□□□ -0.45
CLN3-229ENST00000567963 RPEL1Q2QD12 228 aa12.24□□□□□ -0.45
CLN3-229ENST00000567963 HACD4Q5VWC8 232 aa12.24□□□□□ -0.45
CLN3-229ENST00000567963 SNAPC3Q92966 411 aa12.24□□□□□ -0.45
CLN3-229ENST00000567963 DCSTAMPQ9H295 470 aa12.24□□□□□ -0.45
CLN3-229ENST00000567963 ZNF430Q9H8G1 570 aaPredicted RBP12.24□□□□□ -0.45
CLN3-229ENST00000567963 OR2W1Q9Y3N9 320 aa12.24□□□□□ -0.45
CLN3-229ENST00000567963 TRBV9A0A0B4J1U6 114 aa12.23□□□□□ -0.45
CLN3-229ENST00000567963 NOTOA8MTQ0 251 aa12.23□□□□□ -0.45
CLN3-229ENST00000567963 MPPED1O15442 326 aa12.23□□□□□ -0.45
CLN3-229ENST00000567963 MRPS14O60783 128 aaKnown RBP12.23□□□□□ -0.45
CLN3-229ENST00000567963 FCGR3BO75015 233 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 1054.9 ms