RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SLC25A38Q96DW6 304 aa11.46□□□□□ -0.57
CLN3-213ENST00000565047 RYR3Q15413 4870 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 TMEM235A6NFC5 223 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 LINC01619G3V211 115 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 TUSC2O75896 110 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 SLURP1P55000 103 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 SCAND1P57086 179 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 BRWD1-AS2P59051 145 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 VAX1Q5SQQ9 334 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 HARBI1Q96MB7 349 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 MS4A10Q96PG2 267 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 PRR25Q96S07 402 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 GINS4Q9BRT9 223 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 ST6GALNAC5Q9BVH7 336 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 SLA2Q9H6Q3 261 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 RHBDL2Q9NX52 303 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 OR2W1Q9Y3N9 320 aa11.45□□□□□ -0.58
CLN3-213ENST00000565047 IGKV1D-13A0A0B4J2D9 117 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 H3BUA1 57 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 OVOL1O14753 267 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 CTXN2P0C2S0 81 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 IGKV1-13P0DP09 117 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 RRASP10301 218 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 CD36P16671 472 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 NFYAP23511 347 aaPredicted RBP11.44□□□□□ -0.58
CLN3-213ENST00000565047 ECI1P42126 302 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 UBE2KP61086 200 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 RPL30P62888 115 aaKnown RBP11.44□□□□□ -0.58
CLN3-213ENST00000565047 PITPNAQ00169 270 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 ACSM6Q6P461 480 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 CNIH2Q6PI25 160 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 TEX45Q8NA69 505 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 GRPEL2Q8TAA5 225 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 ABHD5Q8WTS1 349 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 ADTRPQ96IZ2 230 aa11.44□□□□□ -0.58
CLN3-213ENST00000565047 SHOXO15266 292 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 RBMXL2O75526 392 aaKnown RBP11.43□□□□□ -0.58
CLN3-213ENST00000565047 SCGNO76038 276 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 IGHV3-11P01762 117 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 HSPB1P04792 205 aaKnown RBP11.43□□□□□ -0.58
CLN3-213ENST00000565047 TPPP2P59282 170 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 MXD1Q05195 221 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 PRSS8Q16651 343 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 RTL8BQ17RB0 113 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 OVCH2Q7RTZ1 564 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 ZNF429Q86V71 674 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 ZNF645Q8N7E2 425 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 POC5Q8NA72 575 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 OR5T1Q8NG75 326 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 TMEM68Q96MH6 324 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 ANXA10Q9UJ72 324 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 ZNF256Q9Y2P7 627 aaPredicted RBP11.43□□□□□ -0.58
CLN3-213ENST00000565047 ETV7Q9Y603 341 aa11.43□□□□□ -0.58
CLN3-213ENST00000565047 TRGV3P03979 118 aa11.42□□□□□ -0.58
CLN3-213ENST00000565047 TGFBR1P36897 503 aa11.42□□□□□ -0.58
CLN3-213ENST00000565047 DCTN2Q13561 401 aaKnown RBP11.42□□□□□ -0.58
CLN3-213ENST00000565047 NEDD8Q15843 81 aa11.42□□□□□ -0.58
CLN3-213ENST00000565047 OSR1Q8TAX0 266 aaPredicted RBP11.42□□□□□ -0.58
CLN3-213ENST00000565047 RBMX2Q9Y388 322 aaKnown RBP11.42□□□□□ -0.58
CLN3-213ENST00000565047 RBM7Q9Y580 266 aaKnown RBP11.42□□□□□ -0.58
CLN3-213ENST00000565047 DNAH7Q8WXX0 4024 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 A0A0A6YYH2 397 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 LOC100506127A0A0U1RQW1 187 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 A6NJ64 397 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 J3QRK9 145 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 CNIH1O95406 144 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 CRYZL1O95825 349 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 CD69Q07108 199 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 DYRK1AQ13627 763 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 IDNKQ5T6J7 187 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 IDO2Q6ZQW0 420 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 HOGA1Q86XE5 327 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 GVQW1Q8N7I0 195 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 ADAD2Q8NCV1 583 aaKnown RBP11.41□□□□□ -0.58
CLN3-213ENST00000565047 YIPF6Q96EC8 236 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 TINAGL1Q9GZM7 467 aaPredicted RBP11.41□□□□□ -0.58
CLN3-213ENST00000565047 SPATA2Q9UM82 520 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 TNCP24821 2201 aa11.41□□□□□ -0.58
CLN3-213ENST00000565047 TRAV18A0A075B6X5 111 aa11.4□□□□□ -0.58
CLN3-213ENST00000565047 MSGN1A6NI15 193 aa11.4□□□□□ -0.58
CLN3-213ENST00000565047 TMEM127O75204 238 aa11.4□□□□□ -0.58
CLN3-213ENST00000565047 SAA1P0DJI8 122 aaPredicted RBP11.4□□□□□ -0.58
CLN3-213ENST00000565047 PTHLHP12272 177 aa11.4□□□□□ -0.58
CLN3-213ENST00000565047 AADACP22760 399 aa11.4□□□□□ -0.58
CLN3-213ENST00000565047 GNG2P59768 71 aa11.4□□□□□ -0.58
CLN3-213ENST00000565047 ZNF343Q6P1L6 599 aa11.4□□□□□ -0.58
CLN3-213ENST00000565047 IL34Q6ZMJ4 242 aa11.4□□□□□ -0.58
CLN3-213ENST00000565047 AUNIPQ9H7T9 357 aa11.4□□□□□ -0.58
CLN3-213ENST00000565047 ZNF430Q9H8G1 570 aaPredicted RBP11.4□□□□□ -0.58
CLN3-213ENST00000565047 TRBV9A0A0B4J1U6 114 aa11.39□□□□□ -0.59
CLN3-213ENST00000565047 TRIM64CA6NLI5 447 aa11.39□□□□□ -0.59
CLN3-213ENST00000565047 SLC22A5O76082 557 aa11.39□□□□□ -0.59
CLN3-213ENST00000565047 NHLRC4P0CG21 123 aaPredicted RBP11.39□□□□□ -0.59
CLN3-213ENST00000565047 SPNP16150 400 aa11.39□□□□□ -0.59
CLN3-213ENST00000565047 CD40LGP29965 261 aa11.39□□□□□ -0.59
CLN3-213ENST00000565047 DEFA5Q01523 94 aa11.39□□□□□ -0.59
CLN3-213ENST00000565047 CBX3Q13185 183 aa11.39□□□□□ -0.59
CLN3-213ENST00000565047 KLF5Q13887 457 aaPredicted RBP11.39□□□□□ -0.59
CLN3-213ENST00000565047 CDK10Q15131 360 aa11.39□□□□□ -0.59
CLN3-213ENST00000565047 VMA21Q3ZAQ7 101 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms