RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 FLVCR2Q9UPI3 526 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 SVEP1Q4LDE5 3571 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 NSD1Q96L73 2696 aaPredicted RBP16.55■□□□□ 0.24
CLN3-212ENST00000564574 C3orf85A0A1B0GTC6 90 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 H0Y980 276 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 FCGR3BO75015 233 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 MOSP00540 346 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 IGKV1D-33P01593 117 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 IGKV1-33P01594 117 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 H2AFB2P0C5Z0 115 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 AKR1C4P17516 323 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 MECP2P51608 486 aaKnown RBP16.55■□□□□ 0.24
CLN3-212ENST00000564574 OR4C13Q8NGP0 309 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 GALNT14Q96FL9 552 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 TCF19Q9Y242 345 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 KCNIP3Q9Y2W7 256 aa16.55■□□□□ 0.24
CLN3-212ENST00000564574 FN1P02751 2386 aaKnown RBP16.54■□□□□ 0.24
CLN3-212ENST00000564574 IGHV4-59P01825 116 aa16.54■□□□□ 0.24
CLN3-212ENST00000564574 RAG2P55895 527 aa16.54■□□□□ 0.24
CLN3-212ENST00000564574 HES1Q14469 280 aa16.54■□□□□ 0.24
CLN3-212ENST00000564574 TMEM177Q53S58 311 aa16.54■□□□□ 0.24
CLN3-212ENST00000564574 LIAT1Q6ZQX7 453 aa16.54■□□□□ 0.24
CLN3-212ENST00000564574 OSR1Q8TAX0 266 aaPredicted RBP16.54■□□□□ 0.24
CLN3-212ENST00000564574 FLYWCH2Q96CP2 140 aaKnown RBP16.54■□□□□ 0.24
CLN3-212ENST00000564574 EAF1Q96JC9 268 aaPredicted RBP16.54■□□□□ 0.24
CLN3-212ENST00000564574 JMJD8Q96S16 334 aa16.54■□□□□ 0.24
CLN3-212ENST00000564574 TRAV6A0A075B6T7 132 aa16.53■□□□□ 0.24
CLN3-212ENST00000564574 A0A0A6YYJ9 748 aa16.53■□□□□ 0.24
CLN3-212ENST00000564574 HOXA3O43365 443 aaPredicted RBP16.53■□□□□ 0.24
CLN3-212ENST00000564574 HPRT1P00492 218 aa16.53■□□□□ 0.24
CLN3-212ENST00000564574 ANXA3P12429 323 aa16.53■□□□□ 0.24
CLN3-212ENST00000564574 TMEM11P17152 192 aa16.53■□□□□ 0.24
CLN3-212ENST00000564574 BRWD1-AS2P59051 145 aa16.53■□□□□ 0.24
CLN3-212ENST00000564574 OR2B11Q5JQS5 317 aa16.53■□□□□ 0.24
CLN3-212ENST00000564574 Q8N6K4 173 aa16.53■□□□□ 0.24
CLN3-212ENST00000564574 OR8H1Q8NGG4 311 aa16.53■□□□□ 0.24
CLN3-212ENST00000564574 A6NDX4 124 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 PEX14O75381 377 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 CRYZL1O95825 349 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 IGKV1-16P04430 117 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 RPA2P15927 270 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 CD24P25063 80 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 UCP1P25874 307 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 LGALS7P47929 136 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 HILS1P60008 231 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 C16orf82Q7Z2V1 217 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 TP53RKQ96S44 253 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 MARVELD1Q9BSK0 173 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 PLEKHA2Q9HB19 425 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 COMMD9Q9P000 198 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 VPREB3Q9UKI3 123 aa16.52■□□□□ 0.24
CLN3-212ENST00000564574 INMT-MINDY4F8WBC2 141 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 CLDN34H7C241 214 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 RAMP3O60896 148 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 OR2F2O95006 317 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 SFT2D2O95562 160 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 IFNA2P01563 188 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 SERPINE2P07093 398 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 OR5AC1P0C628 307 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 OR4E1P0C645 316 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 ANXA7P20073 488 aaKnown RBP16.51■□□□□ 0.23
CLN3-212ENST00000564574 LPAR6P43657 344 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 RPS16P62249 146 aaKnown RBP16.51■□□□□ 0.23
CLN3-212ENST00000564574 SUPT4H1P63272 117 aaKnown RBP16.51■□□□□ 0.23
CLN3-212ENST00000564574 CCBE1Q6UXH8 406 aaPredicted RBP16.51■□□□□ 0.23
CLN3-212ENST00000564574 MINDY2Q8NBR6 621 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 TSNAXQ99598 290 aaKnown RBP16.51■□□□□ 0.23
CLN3-212ENST00000564574 AIFM2Q9BRQ8 373 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 TMEM222Q9H0R3 208 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 C1RLQ9NZP8 487 aa16.51■□□□□ 0.23
CLN3-212ENST00000564574 PIGBOS1A0A0B4J2F0 54 aa16.5■□□□□ 0.23
CLN3-212ENST00000564574 SHOXO15266 292 aa16.5■□□□□ 0.23
CLN3-212ENST00000564574 SPDEFO95238 335 aa16.5■□□□□ 0.23
CLN3-212ENST00000564574 VAMP1P23763 118 aa16.5■□□□□ 0.23
CLN3-212ENST00000564574 PPP1R1AQ13522 171 aa16.5■□□□□ 0.23
CLN3-212ENST00000564574 LY6EQ16553 131 aa16.5■□□□□ 0.23
CLN3-212ENST00000564574 ZNF585BQ52M93 769 aa16.5■□□□□ 0.23
CLN3-212ENST00000564574 HARBI1Q96MB7 349 aa16.5■□□□□ 0.23
CLN3-212ENST00000564574 RBM14Q96PK6 669 aaKnown RBP16.5■□□□□ 0.23
CLN3-212ENST00000564574 RAB18Q9NP72 206 aa16.5■□□□□ 0.23
CLN3-212ENST00000564574 DNAJC9-AS1A6NH13 148 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 PRAF2O60831 178 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 DHFRP00374 187 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 HRASP01112 189 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 HLA-AP01891 365 aaKnown RBP16.49■□□□□ 0.23
CLN3-212ENST00000564574 IL5P05113 134 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 VSIG10L2P0DP72 767 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 SPNP16150 400 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 SRPXP78539 464 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 HNF4GQ14541 408 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 TMEM187Q14656 261 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 OXA1LQ15070 435 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 SLC9A3R2Q15599 337 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 C4orf46Q504U0 113 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 LYG2Q86SG7 212 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 NPBQ8NG41 125 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 GLYATL2Q8WU03 294 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 SLC25A33Q9BSK2 321 aa16.49■□□□□ 0.23
CLN3-212ENST00000564574 C9orf170A2RU37 121 aa16.48■□□□□ 0.23
CLN3-212ENST00000564574 NBR2O15453 112 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms