RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 WDR82Q6UXN9 313 aa11.27□□□□□ -0.6
CLK3-215ENST00000564353 ZNF645Q8N7E2 425 aa11.27□□□□□ -0.6
CLK3-215ENST00000564353 TMEM178AQ8NBL3 297 aa11.27□□□□□ -0.6
CLK3-215ENST00000564353 DEFB124Q8NES8 71 aa11.27□□□□□ -0.6
CLK3-215ENST00000564353 RIF1Q5UIP0 2472 aaKnown RBP11.27□□□□□ -0.6
CLK3-215ENST00000564353 INTS1Q8N201 2190 aaKnown RBP11.27□□□□□ -0.61
CLK3-215ENST00000564353 CRYAAP02489 173 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 RAB4AP20338 218 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 KIR2DL2P43627 348 aaPredicted RBP11.27□□□□□ -0.61
CLK3-215ENST00000564353 ZNF610Q8N9Z0 462 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 ZNRF1Q8ND25 227 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 OR10D4PQ8NGN7 298 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 FRZBQ92765 325 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 ZDHHC11Q9H8X9 412 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 OTOGLQ3ZCN5 2332 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 SOD3P08294 240 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 RPRMLQ8N4K4 120 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 LRRC29Q8WV35 223 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 FAM210BQ96KR6 192 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 SNX22Q96L94 193 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 SMIM7Q9BQ49 75 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 QTRT1Q9BXR0 403 aaKnown RBP11.27□□□□□ -0.61
CLK3-215ENST00000564353 WIPI2Q9Y4P8 454 aa11.27□□□□□ -0.61
CLK3-215ENST00000564353 ZFHX2Q9C0A1 2572 aaPredicted RBP11.26□□□□□ -0.61
CLK3-215ENST00000564353 FCGR3BO75015 233 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 EDDM3BP56851 147 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 RPL39P5Q59GN2 51 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 TMEM41BQ5BJD5 291 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 FFAR4Q5NUL3 377 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 NCR3LG1Q68D85 454 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 ACP7Q6ZNF0 438 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 H2BFWTQ7Z2G1 175 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 Q8IYB0 196 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 WDR31Q8NA23 367 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 OR4F5Q8NH21 305 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 OR4F4Q96R69 305 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 ELOVL1Q9BW60 279 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 TRAV38-1A0A0B4J264 116 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 LRRC30A6NM36 301 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 IQCF6A8MYZ5 107 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 TRGC1P0CF51 173 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 CD81P60033 236 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 MSMPQ1L6U9 139 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 Q6ZT83 130 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 MOB1BQ7L9L4 216 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 CD177Q8N6Q3 437 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 OR8G5Q8NG78 346 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 ABHD5Q8WTS1 349 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 GOLT1BQ9Y3E0 138 aa11.26□□□□□ -0.61
CLK3-215ENST00000564353 NPSP0C0P6 89 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 ZNF83P51522 516 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 OR51G1Q8NGK1 321 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 OR10G4Q8NGN3 311 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 OR10G9Q8NGN4 311 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 OR10G7Q8NGN6 311 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 CISD1Q9NZ45 108 aaKnown RBP11.25□□□□□ -0.61
CLK3-215ENST00000564353 CLCF1Q9UBD9 225 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 GNG12Q9UBI6 72 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 GAB2Q9UQC2 676 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 TSTD3H0UI37 97 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 FABP4P15090 132 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 HNF1AP20823 631 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 DEFB109BQ30KR1 87 aa11.25□□□□□ -0.61
CLK3-215ENST00000564353 DUX4L9Q6RFH8 374 aaPredicted RBP11.25□□□□□ -0.61
CLK3-215ENST00000564353 PATZ1Q9HBE1 687 aaKnown RBP11.25□□□□□ -0.61
CLK3-215ENST00000564353 TRAV3A0A0B4J244 114 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 PGPEP1LA6NFU8 196 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 NPIPB11E5RHQ5 1161 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 OR9G9P0C7N8 305 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 SLC35E3Q7Z769 313 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 DEFB108BQ8NET1 73 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 PARD6GQ9BYG4 376 aaPredicted RBP11.24□□□□□ -0.61
CLK3-215ENST00000564353 ASCL3Q9NQ33 180 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 OOEPA6NGQ2 149 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 C1QTNF9BB2RNN3 333 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 EREGO14944 169 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 PAGE4O60829 102 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 SLC25A6P12236 298 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 S100A2P29034 98 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 GCH1P30793 250 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 NKX6-1P78426 367 aaPredicted RBP11.24□□□□□ -0.61
CLK3-215ENST00000564353 PRSS8Q16651 343 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 OR10P1Q8NGE3 313 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 MALSU1Q96EH3 234 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 SMDT1Q9H4I9 107 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 VAX2Q9UIW0 290 aa11.24□□□□□ -0.61
CLK3-215ENST00000564353 CSMD1Q96PZ7 3565 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 SPRY3O43610 288 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 OPN1MWP04001 364 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 OPN1MW2P0DN77 364 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 OPN1MW3P0DN78 364 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 HIST1H1BP16401 226 aaKnown RBP11.23□□□□□ -0.61
CLK3-215ENST00000564353 TMEM14EPQ6UXP3 125 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 C16orf82Q7Z2V1 217 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 SDF2L1Q9HCN8 221 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.23□□□□□ -0.61
CLK3-215ENST00000564353 HSPB7Q9UBY9 170 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 PROP1O75360 226 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 MYOD1P15172 320 aa11.23□□□□□ -0.61
CLK3-215ENST00000564353 HOXA5P20719 270 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms