RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ZDHHC16Q969W1 377 aa9.54□□□□□ -0.88
LDLR-212ENST00000560467 MRGPRFQ96AM1 343 aa9.54□□□□□ -0.88
LDLR-212ENST00000560467 GALNT14Q96FL9 552 aa9.54□□□□□ -0.88
LDLR-212ENST00000560467 SEC22CQ9BRL7 303 aa9.54□□□□□ -0.88
LDLR-212ENST00000560467 AGMATQ9BSE5 352 aa9.54□□□□□ -0.88
LDLR-212ENST00000560467 CHIAQ9BZP6 476 aa9.54□□□□□ -0.88
LDLR-212ENST00000560467 SIRT7Q9NRC8 400 aa9.54□□□□□ -0.88
LDLR-212ENST00000560467 SDHAF2Q9NX18 166 aa9.54□□□□□ -0.88
LDLR-212ENST00000560467 C1RLQ9NZP8 487 aa9.54□□□□□ -0.88
LDLR-212ENST00000560467 SHPKQ9UHJ6 478 aa9.54□□□□□ -0.88
LDLR-212ENST00000560467 SAA2-SAA4A0A096LPE2 208 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 HMX3A6NHT5 357 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 BUB1B-PAK6H3BSN5 160 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 SAA2P0DJI9 122 aaPredicted RBP9.53□□□□□ -0.88
LDLR-212ENST00000560467 VSIG10L2P0DP72 767 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 MC5RP33032 325 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 BCAP31P51572 246 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 UBE2E1P51965 193 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 ZNF134P52741 427 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 MINOS1Q5TGZ0 78 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 GPR157Q5UAW9 335 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 RUSC1-AS1Q66K80 236 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 C1QL4Q86Z23 238 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 C11orf42Q8N5U0 333 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 ZNF439Q8NDP4 499 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 MITD1Q8WV92 249 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 LHX4Q969G2 390 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 RRNAD1Q96FB5 475 aaKnown RBP9.53□□□□□ -0.88
LDLR-212ENST00000560467 CITED1Q99966 193 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 PARP12Q9H0J9 701 aaKnown RBP9.53□□□□□ -0.88
LDLR-212ENST00000560467 IFI27L2Q9H2X8 130 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 FAM212BQ9NTI7 297 aaPredicted RBP9.53□□□□□ -0.88
LDLR-212ENST00000560467 DPM3Q9P2X0 92 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 MINOS1-NBL1R4GNA1 71 aa9.53□□□□□ -0.88
LDLR-212ENST00000560467 A0A1B0GUS0 222 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 OOSP1A8MZH6 123 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 H7C2Y5 167 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 M0QZ24 198 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 NDUFA7O95182 113 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 CRYBA1P05813 215 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 OR5AC1P0C628 307 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 TRAPPC2P0DI81 140 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 TRAPPC2BP0DI82 140 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 RAB13P51153 203 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 ERVK-16P61578 105 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 RRAS2P62070 204 aaPredicted RBP9.52□□□□□ -0.89
LDLR-212ENST00000560467 HLA-DRB5Q30154 266 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 LDLRAD3Q86YD5 345 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 SPAG16Q8N0X2 631 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 Q8N7P7 452 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 OR4S2Q8NH73 311 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 IL22RA2Q969J5 263 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 PDCD10Q9BUL8 212 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 TMEM222Q9H0R3 208 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 SIRPDQ9H106 197 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 PRDM13Q9H4Q3 707 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 FAM96BQ9Y3D0 163 aa9.52□□□□□ -0.89
LDLR-212ENST00000560467 TBL2Q9Y4P3 447 aaKnown RBP9.52□□□□□ -0.89
LDLR-212ENST00000560467 DUXBA0A1W2PPF3 345 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 CLPSL1A2RUU4 121 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 C5orf51A6NDU8 294 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 FAM25EA8MYX2 175 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 SLC31A2O15432 143 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 FCGR3BO75015 233 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 BPIFB3P59826 476 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 CYCSP99999 105 aaKnown RBP9.51□□□□□ -0.89
LDLR-212ENST00000560467 SP6Q3SY56 376 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 RPL39P5Q59GN2 51 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 TMEM268Q5VZI3 342 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 THOC7Q6I9Y2 204 aaKnown RBP9.51□□□□□ -0.89
LDLR-212ENST00000560467 DHRS7BQ6IAN0 325 aaPredicted RBP9.51□□□□□ -0.89
LDLR-212ENST00000560467 FAM53AQ6NSI3 398 aaPredicted RBP9.51□□□□□ -0.89
LDLR-212ENST00000560467 GSG1LQ6UXU4 331 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 Q6YL49 198 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 LIAT1Q6ZQX7 453 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 ZNF833PQ6ZTB9 187 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 MOB3BQ86TA1 216 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 AKAP14Q86UN6 197 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 OR52B4Q8NGK2 314 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 ASB13Q8WXK3 278 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 TMEM230Q96A57 120 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 SPIN2AQ99865 258 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 SPIN2BQ9BPZ2 258 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 RAB18Q9NP72 206 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 MGAT4CQ9UBM8 478 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 CACFD1Q9UGQ2 172 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 TMED3Q9Y3Q3 217 aa9.51□□□□□ -0.89
LDLR-212ENST00000560467 C13orf42A0A1B0GVH6 325 aa9.5□□□□□ -0.89
LDLR-212ENST00000560467 RBFOX2O43251 390 aaKnown RBP eCLIP9.5□□□□□ -0.89
LDLR-212ENST00000560467 CCNKO75909 580 aa9.5□□□□□ -0.89
LDLR-212ENST00000560467 TSPAN15O95858 294 aa9.5□□□□□ -0.89
LDLR-212ENST00000560467 HPRT1P00492 218 aa9.5□□□□□ -0.89
LDLR-212ENST00000560467 HRASP01112 189 aa9.5□□□□□ -0.89
LDLR-212ENST00000560467 IGLV1-47P01700 117 aa9.5□□□□□ -0.89
LDLR-212ENST00000560467 BRS3P32247 399 aa9.5□□□□□ -0.89
LDLR-212ENST00000560467 DUTP33316 252 aaKnown RBP9.5□□□□□ -0.89
LDLR-212ENST00000560467 LPAR6P43657 344 aa9.5□□□□□ -0.89
LDLR-212ENST00000560467 AKR1C2P52895 323 aa9.5□□□□□ -0.89
LDLR-212ENST00000560467 OR8H3Q8N146 312 aa9.5□□□□□ -0.89
LDLR-212ENST00000560467 DRAXINQ8NBI3 349 aaPredicted RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms