RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 UTF1Q5T230 341 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 MDP1Q86V88 176 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 MANBALQ9NQG1 85 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 LIN7CQ9NUP9 197 aaKnown RBP10.34□□□□□ -0.75
LDLR-205ENST00000557933 PSG11Q9UQ72 335 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 SCO2A0A1W2PP80 73 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 AQP7O14520 342 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 LYZL6O75951 148 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 NPSP0C0P6 89 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 TCL1AP56279 114 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 OR5I1Q13606 314 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 HLA-DRB5Q30154 266 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 Q6P435 159 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 VN1R17PQ8TDU5 208 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 TMEM170AQ8WVE7 144 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 C2orf88Q9BSF0 95 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 HINT2Q9BX68 163 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 TMEM242Q9NWH2 141 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 TCFL5Q9UL49 500 aa10.34□□□□□ -0.75
LDLR-205ENST00000557933 CTXND1A0A1B0GTU2 59 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 C12orf77C9JDV5 145 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 WISP2O76076 250 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 ACTL6BO94805 426 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 CLDN14O95500 239 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 MYOD1P15172 320 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 CDC34P49427 236 aaPredicted RBP10.33□□□□□ -0.76
LDLR-205ENST00000557933 GFRA1P56159 465 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 ACTL10Q5JWF8 245 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 PRAMEF6Q5VXH4 476 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 SPATA31B1PQ5VZV4 182 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 MIC13Q5XKP0 118 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 DPPA3Q6W0C5 159 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 LINC01551Q86U37 167 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 NEIL1Q96FI4 390 aaPredicted RBP10.33□□□□□ -0.76
LDLR-205ENST00000557933 PSMG3Q9BT73 122 aaPredicted RBP10.33□□□□□ -0.76
LDLR-205ENST00000557933 QTRT1Q9BXR0 403 aaKnown RBP10.33□□□□□ -0.76
LDLR-205ENST00000557933 RNF114Q9Y508 228 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 HCFC1P51610 2035 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 ASH1LQ9NR48 2969 aaKnown RBP10.33□□□□□ -0.76
LDLR-205ENST00000557933 TRAV34A0A0B4J273 112 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 DUXBA0A1W2PPF3 345 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 PRB4P10163 310 aaPredicted RBP10.33□□□□□ -0.76
LDLR-205ENST00000557933 COX5BP10606 129 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 SPCS3P61009 180 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 PLGLB1Q02325 96 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 RIPPLY2Q5TAB7 128 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 ATP1A1-AS1Q5TC04 95 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 Q6ZVH6 145 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 ZNF573Q86YE8 665 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 P2RX4Q99571 388 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 CTDSP1Q9GZU7 261 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 WDR54Q9H977 334 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 ZNF391Q9UJN7 358 aa10.33□□□□□ -0.76
LDLR-205ENST00000557933 NBASA2RRP1 2371 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 RRHO14718 337 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 ARL14EPLP0DKL9 152 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 TMEM14EPQ6UXP3 125 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 ABHD12Q8N2K0 398 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 KCNE4Q8WWG9 221 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 ZDHHC11Q9H8X9 412 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 OBP2BQ9NPH6 170 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 TRAV3A0A0B4J244 114 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 LRP5LA4QPB2 252 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 MKRN2OSH3BPM6 223 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 AGFG2O95081 481 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 IRF2P14316 349 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 COX5AP20674 150 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 CD82P27701 267 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 PPP1CBP62140 327 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 GBGT1Q8N5D6 347 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 PINX1Q96BK5 328 aaKnown RBP10.32□□□□□ -0.76
LDLR-205ENST00000557933 NEU1Q99519 415 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 ACTR3CQ9C0K3 210 aaPredicted RBP10.32□□□□□ -0.76
LDLR-205ENST00000557933 TP53TG5Q9Y2B4 290 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 LOXL2Q9Y4K0 774 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 CACNA1HO95180 2353 aa10.32□□□□□ -0.76
LDLR-205ENST00000557933 A0A1W2PPV4 95 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 LRRC30A6NM36 301 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 LHX2P50458 406 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 H2BFWTQ7Z2G1 175 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 ATOH7Q8N100 152 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 NAGKQ9UJ70 344 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 NAV3Q8IVL0 2385 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 FCGR3BO75015 233 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 HBZP02008 142 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 CLDN18P56856 261 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 FXYD3Q14802 87 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 CT55Q8WUE5 264 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 HSPB9Q9BQS6 159 aa10.31□□□□□ -0.76
LDLR-205ENST00000557933 FOXH1O75593 365 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 SYNGR4O95473 234 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 IGHEP01854 428 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 OR9G9P0C7N8 305 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 RAC2P15153 192 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 RNPS1Q15287 305 aaKnown RBP10.3□□□□□ -0.76
LDLR-205ENST00000557933 IQCJQ1A5X6 159 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 Q6ZS49 121 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 Q8NFD4 153 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 LSM10Q969L4 123 aaKnown RBP10.3□□□□□ -0.76
LDLR-205ENST00000557933 TMEM147Q9BVK8 224 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms