RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 MSMO1Q15800 293 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 VAX1Q5SQQ9 334 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 AADACL3Q5VUY0 350 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 ZNF660Q6AZW8 331 aaPredicted RBP9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 STEAP1BQ6NZ63 245 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 ZNF66Q6ZN08 573 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 ZNF818PQ6ZRF7 136 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 OR5AU1Q8NGC0 362 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 DDB2Q92466 427 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 CITED1Q99966 193 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 HSPB9Q9BQS6 159 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 WNT10AQ9GZT5 417 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 FXYD6Q9H0Q3 95 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 PARP11Q9NR21 331 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 PSMB11A5LHX3 300 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 SPDEFO95238 335 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 HLA-DRB1P01911 266 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 CD28P10747 220 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 PGAM2P15259 253 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 TBPP20226 339 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 S100GP29377 79 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 GNRHRP30968 328 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 LGALS7P47929 136 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 SLC35B1P78383 322 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 VMA21Q3ZAQ7 101 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 SCGB2B2Q4G0G5 96 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 TMEM177Q53S58 311 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 KHDC1LQ5JSQ8 128 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 SPANXN2Q5MJ10 180 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 LPCAT3Q6P1A2 487 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 ZNF329Q86UD4 541 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 CMTM1Q8IZ96 169 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 STPG2Q8N412 459 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 POC5Q8NA72 575 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 OR4X2Q8NGF9 303 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 OR4D10Q8NGI6 311 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 OR6Q1Q8NGQ2 317 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 OR51H1Q8NH63 302 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 OR4S2Q8NH73 311 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 CHPT1Q8WUD6 406 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 SOSTQ9BQB4 213 aa9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 THAP7Q9BT49 309 aaPredicted RBP9.05□□□□□ -0.96
CCDC88C-212ENST00000556767 IGHV7-81A0A0B4J1V7 117 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 DISC1C4P0D8 188 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 GPR31O00270 319 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 FCN1O00602 326 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 GSTZ1O43708 216 aaPredicted RBP9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 CA2P00918 260 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 CD74P04233 296 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 RLN1P04808 185 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 AKAIN1P0CW23 69 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 VDAC1P21796 283 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 KIR2DS2P43631 304 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 PPP5CP53041 499 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 GNB1P62873 340 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 EIF4EBP1Q13541 118 aaPredicted RBP9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 MEF2DQ14814 521 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 PHLDA2Q53GA4 152 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 FAAP20Q6NZ36 180 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 C10orf99Q6UWK7 81 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 CCDC190Q86UF4 302 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 SPAG16Q8N0X2 631 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 ARRDC1Q8N5I2 433 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 OSR1Q8TAX0 266 aaPredicted RBP9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 GON7Q9BXV9 100 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 OR51J1Q9H342 316 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 TPSG1Q9NRR2 321 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 WSB1Q9Y6I7 421 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 V9GYH0 126 aa9.04□□□□□ -0.96
CCDC88C-212ENST00000556767 TCRBV4S1A1TA0A5B7 111 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 SRRM4A7MD48 611 aaKnown RBP9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 M0QZ24 198 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 ATP6V0E1O15342 81 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 PGLYRP1O75594 196 aaPredicted RBP9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 CNIH1O95406 144 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 IGLV2-23P01705 113 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 CX3CL1P78423 397 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 ECSCRQ19T08 205 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 NSUN5P1Q3KNT7 163 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 IDO2Q6ZQW0 420 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 PPP1R27Q86WC6 154 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 SLC38A6Q8IZM9 456 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 Q8N402 240 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 SGMS2Q8NHU3 365 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 CITED2Q99967 270 aaPredicted RBP9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 MCUBQ9NWR8 336 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 STAB1Q9NY15 2570 aa9.03□□□□□ -0.96
CCDC88C-212ENST00000556767 A0A1W2PRX2 142 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 ANKRD20A5PA0PJZ0 165 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 A6NHS1 94 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 RAMP3O60896 148 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 HRASP01112 189 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 SAA1P0DJI8 122 aaPredicted RBP9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 PTBP1P26599 531 aaKnown RBP eCLIP9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 INPP1P49441 399 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 UCP3P55916 312 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 UBE2KP61086 200 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 FXYD3Q14802 87 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 ZNF79Q15937 498 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 SSX9Q7RTT3 188 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms