RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 IGKV1-16P04430 117 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 MECP2P51608 486 aaKnown RBP9.6□□□□□ -0.87
SHMT2-223ENST00000556689 NCS1P62166 190 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 MXD1Q05195 221 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 CTF1Q16619 201 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 RPEL1Q2QD12 228 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 ZNF343Q6P1L6 599 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 TMEM91Q6ZNR0 172 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 DRAXINQ8NBI3 349 aaPredicted RBP9.6□□□□□ -0.87
SHMT2-223ENST00000556689 OR2K2Q8NGT1 345 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 TMEM68Q96MH6 324 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 NEURL2Q9BR09 285 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 UQCC2Q9BRT2 126 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 AGMATQ9BSE5 352 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 PLEKHA3Q9HB20 300 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 PEMTQ9UBM1 199 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 ADAM30Q9UKF2 790 aa9.6□□□□□ -0.87
SHMT2-223ENST00000556689 TNCP24821 2201 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 RBMY1BA6NDE4 496 aaKnown RBP9.59□□□□□ -0.87
SHMT2-223ENST00000556689 RBMY1EA6NEQ0 496 aaKnown RBP9.59□□□□□ -0.87
SHMT2-223ENST00000556689 OR2A4O95047 310 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 BRI3O95415 125 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 RBMY1DP0C7P1 496 aaKnown RBP9.59□□□□□ -0.87
SHMT2-223ENST00000556689 SDC2P34741 201 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 CEACAM6P40199 344 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 RORCP51449 518 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 CD81P60033 236 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 INSL4Q14641 139 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 MZT2AQ6P582 158 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 C6orf201Q7Z4U5 140 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 SETD6Q8TBK2 473 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 EDARADDQ8WWZ3 215 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 USMG5Q96IX5 58 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 TINAGL1Q9GZM7 467 aaPredicted RBP9.59□□□□□ -0.87
SHMT2-223ENST00000556689 NAA50Q9GZZ1 169 aaKnown RBP9.59□□□□□ -0.87
SHMT2-223ENST00000556689 PARP12Q9H0J9 701 aaKnown RBP9.59□□□□□ -0.87
SHMT2-223ENST00000556689 C11orf54Q9H0W9 315 aaPredicted RBP9.59□□□□□ -0.87
SHMT2-223ENST00000556689 RBM38Q9H0Z9 239 aaKnown RBP9.59□□□□□ -0.87
SHMT2-223ENST00000556689 CHMP1AQ9HD42 196 aaPredicted RBP9.59□□□□□ -0.87
SHMT2-223ENST00000556689 SLC2A8Q9NY64 477 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 CCDC59Q9P031 241 aaKnown RBP9.59□□□□□ -0.87
SHMT2-223ENST00000556689 V9GY05 133 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 ALMS1Q8TCU4 4167 aa9.59□□□□□ -0.87
SHMT2-223ENST00000556689 NOTOA8MTQ0 251 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 PROP1O75360 226 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 LY6G6CO95867 125 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 NAPSAO96009 420 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 TRBV12-3P01733 135 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 ZBTB25P24278 435 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 LGALS7P47929 136 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 LINC00205P59089 165 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 DYRK1AQ13627 763 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 RAB11BQ15907 218 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 ZNF880Q6PDB4 577 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 PDPNQ86YL7 162 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 LAX1Q8IWV1 398 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 DEFB125Q8N687 156 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 BVESQ8NE79 360 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 OR6M1Q8NGM8 313 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 LINC00476Q8WZB0 136 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 SNAPC3Q92966 411 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 ZNF221Q9UK13 617 aa9.58□□□□□ -0.88
SHMT2-223ENST00000556689 A0A0B4J203 849 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 A6NHS1 94 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 ZNF785A8K8V0 405 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 OR11H12B2RN74 326 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 APOA2P02652 100 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 CD7P09564 240 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 UBBP0CG47 229 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 SSBP2P81877 361 aaPredicted RBP9.57□□□□□ -0.88
SHMT2-223ENST00000556689 PJVKQ0ZLH3 352 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 OR10K2Q6IF99 312 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 SFXN4Q6P4A7 337 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 ZNF383Q8NA42 475 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 ACOT12Q8WYK0 555 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 PTX4Q96A99 478 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 SLC25A46Q96AG3 418 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 KCTD12Q96CX2 325 aaKnown RBP9.57□□□□□ -0.88
SHMT2-223ENST00000556689 DCUN1D5Q9BTE7 237 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 RIMS4Q9H426 269 aaPredicted RBP9.57□□□□□ -0.88
SHMT2-223ENST00000556689 COA4Q9NYJ1 87 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 DAPK2Q9UIK4 370 aa9.57□□□□□ -0.88
SHMT2-223ENST00000556689 HTR2CP28335 458 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 S100A5P33763 92 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 SCAND1P57086 179 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 DEFA5Q01523 94 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 SPCS2Q15005 226 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 CD300EQ496F6 205 aaPredicted RBP9.56□□□□□ -0.88
SHMT2-223ENST00000556689 IDNKQ5T6J7 187 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 MOB1BQ7L9L4 216 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 RNF167Q9H6Y7 350 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 SRD5A3Q9H8P0 318 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 SLC35D1Q9NTN3 355 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 PLEKHJ1Q9NW61 149 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 OR1A1Q9P1Q5 309 aa9.56□□□□□ -0.88
SHMT2-223ENST00000556689 AK6Q9Y3D8 172 aaKnown RBP9.56□□□□□ -0.88
SHMT2-223ENST00000556689 TRBV6-6A0A0A6YYG2 114 aa9.55□□□□□ -0.88
SHMT2-223ENST00000556689 IFITM5A6NNB3 132 aa9.55□□□□□ -0.88
SHMT2-223ENST00000556689 SLC17A2O00624 439 aa9.55□□□□□ -0.88
SHMT2-223ENST00000556689 BPNT1O95861 308 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms