RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ZNF491Q8N8L2 437 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 BVESQ8NE79 360 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 RAB2BQ8WUD1 216 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 C4orf3Q8WVX3 66 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 CLCC1Q96S66 551 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 BCL7BQ9BQE9 202 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 AUNIPQ9H7T9 357 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 GNB4Q9HAV0 340 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 AURKAIP1Q9NWT8 199 aaPredicted RBP8□□□□□ -1.13
CCDC88C-206ENST00000553437 OR2W1Q9Y3N9 320 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 PLXNB1O43157 2135 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 H3BMQ9 156 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 I3L521 148 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 J3QRK9 145 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 ARPC1BO15143 372 aaKnown RBP7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 SLC25A17O43808 307 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 DUS4LO95620 317 aaKnown RBP7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 CA2P00918 260 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 PTHLHP12272 177 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 RAB9AP51151 201 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 KRTAP10-11P60412 298 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 TAGLNQ01995 201 aaKnown RBP7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 EGFEM1PQ0D2K5 195 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 FHL3Q13643 280 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 ECSCRQ19T08 205 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 MRGPRG-AS1Q2M3A8 158 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 HOGA1Q86XE5 327 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 UBE2E2Q96LR5 201 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 FAM103A1Q9BTL3 118 aaKnown RBP7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 FUNDC2Q9BWH2 189 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 DIABLOQ9NR28 239 aa7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 FOXA2Q9Y261 457 aaPredicted RBP7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 RBM7Q9Y580 266 aaKnown RBP7.99□□□□□ -1.13
CCDC88C-206ENST00000553437 A0A1W2PN81 502 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 XRCC3O43542 346 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 RRASP10301 218 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 CHRNA7P36544 502 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 LUMP51884 338 aaPredicted RBP7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 NCS1P62166 190 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 RUNX1Q01196 453 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 TMEM267Q0VDI3 215 aaPredicted RBP7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 PJVKQ0ZLH3 352 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 EIF4EBP1Q13541 118 aaPredicted RBP7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 FXYD3Q14802 87 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 AKIRIN2Q53H80 203 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 ASPHD1Q5U4P2 390 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 TMEM65Q6PI78 240 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 PPP1R27Q86WC6 154 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 ZNF645Q8N7E2 425 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 TCTEX1D1Q8N7M0 179 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 LFNGQ8NES3 379 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 BEST4Q8NFU0 473 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 ARPC1AQ92747 370 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 SLC25A46Q96AG3 418 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 ADTRPQ96IZ2 230 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 HARBI1Q96MB7 349 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 VSIG4Q9Y279 399 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 RBMX2Q9Y388 322 aaKnown RBP7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 A3GALT2U3KPV4 340 aa7.98□□□□□ -1.13
CCDC88C-206ENST00000553437 HOXD3P31249 432 aaPredicted RBP7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 BRWD1-AS2P59051 145 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 UBE2KP61086 200 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 VBP1P61758 197 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 GNB1P62873 340 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 RPL30P62888 115 aaKnown RBP7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 RTL8BQ17RB0 113 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 UBE2NLQ5JXB2 153 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 UNQ5815/PRO19632Q6UWF5 114 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 OR11H1Q8NG94 326 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 CASTOR1Q8WTX7 329 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 SNAPC3Q92966 411 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 S100A16Q96FQ6 103 aaKnown RBP7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 DCUN1D5Q9BTE7 237 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 MCRIP2Q9BUT9 160 aaKnown RBP7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 ANAPC10Q9UM13 185 aa7.97□□□□□ -1.13
CCDC88C-206ENST00000553437 K7EIL1 84 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 SHOXO15266 292 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 SLC22A5O76082 557 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 CRYZL1O95825 349 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 FCER2P06734 321 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 AADACP22760 399 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 FCGR2CP31995 323 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 CBX5P45973 191 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 TAS2R20P59543 309 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 CTF1Q16619 201 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 ACTBL2Q562R1 376 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 OVCH2Q7RTZ1 564 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 ANKRD13BQ86YJ7 626 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 SAMD12Q8N8I0 201 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 TEX45Q8NA69 505 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 OR5M8Q8NGP6 311 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 OR1N2Q8NGR9 330 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 GRPEL2Q8TAA5 225 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 MRAPQ8TCY5 172 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 ABHD5Q8WTS1 349 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 BORCS5Q969J3 196 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 OR5B12Q96R08 314 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 GPR61Q9BZJ8 451 aa7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 NAA50Q9GZZ1 169 aaKnown RBP7.96□□□□□ -1.14
CCDC88C-206ENST00000553437 ALX4Q9H161 411 aaPredicted RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms