RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 IFNA1P01562 189 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 CRYAAP02489 173 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 PFN1P07737 140 aaKnown RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 ZNF883P0CG24 379 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 NPPCP23582 126 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 MRPL49Q13405 166 aaKnown RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 EDDM3AQ14507 147 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 P2RY6Q15077 328 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 BSXQ3C1V8 233 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 UTF1Q5T230 341 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 ACP7Q6ZNF0 438 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 SSX9Q7RTT3 188 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 VKORC1L1Q8N0U8 176 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 OR51G1Q8NGK1 321 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 NINJ1Q92982 152 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 HIST1H2BLQ99880 126 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 QTRT1Q9BXR0 403 aaKnown RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 PARD6GQ9BYG4 376 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 ZMAT5Q9UDW3 170 aaKnown RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 TRAV38-1A0A0B4J264 116 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 CTXND1A0A1B0GTU2 59 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 A0A1W2PPQ1 181 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 PGPEP1LA6NFU8 196 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 ZNF729A6NN14 1252 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 OPN1MWP04001 364 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 OR9G9P0C7N8 305 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 OPN1MW2P0DN77 364 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 OPN1MW3P0DN78 364 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 PSMB3P49720 205 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 SOX8P57073 446 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 UBE2G2P60604 165 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 MSMO1Q15800 293 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 ACSF3Q4G176 576 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 SLC35E4Q6ICL7 350 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 H2BFWTQ7Z2G1 175 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 CENPVQ7Z7K6 275 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 CD177Q8N6Q3 437 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 Q8N7P7 452 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 LINC00469Q8N7U9 141 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 OR10P1Q8NGE3 313 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 OR10A7Q8NGE5 316 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 GMPPAQ96IJ6 420 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 FER1L6-AS2Q96M78 137 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 PACRGQ96M98 296 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 PCGF1Q9BSM1 259 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM147Q9BVK8 224 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 ZDHHC11Q9H8X9 412 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 TIMM9Q9Y5J7 89 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 ELOA3CA0A087WX78 387 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-213ENST00000552720 MARCH11A6NNE9 402 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 CLDN14O95500 239 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 HIST1H1BP16401 226 aaKnown RBP6.24□□□□□ -1.41
LIMA1-213ENST00000552720 GPX4P36969 197 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-213ENST00000552720 GALR1P47211 349 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 FOXF2Q12947 444 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 CATR1Q13166 79 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 LURAP1LQ8IV03 231 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 WDR31Q8NA23 367 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 SVIPQ8NHG7 77 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 S100PBPQ96BU1 408 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 DERL1Q9BUN8 251 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 CLCF1Q9UBD9 225 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 CACNA1HO95180 2353 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM210A6NLX4 147 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 C15orf62A8K5M9 175 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 IFNL4K9M1U5 179 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 TIMM8AO60220 97 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-213ENST00000552720 CECR9P0C854 216 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 SP9P0CG40 484 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 ATP5G3P48201 142 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 TGFBR3Q03167 851 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 SPRNQ5BIV9 151 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 FIP1L1Q6UN15 594 aaKnown RBP6.24□□□□□ -1.41
LIMA1-213ENST00000552720 FAM214BQ7L5A3 538 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 DEFB123Q8N688 67 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 Q8TCH9 128 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 EAF1Q96JC9 268 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-213ENST00000552720 MEGF10Q96KG7 1140 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 AGMATQ9BSE5 352 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM204Q9BSN7 226 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 CTDSP1Q9GZU7 261 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 PATZ1Q9HBE1 687 aaKnown RBP6.24□□□□□ -1.41
LIMA1-213ENST00000552720 GFOD1Q9NXC2 390 aa6.24□□□□□ -1.41
LIMA1-213ENST00000552720 IGHV3OR15-7A0A075B7D8 119 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 TRAV3A0A0B4J244 114 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 H7BYZ3 331 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 RAB29O14966 203 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 NKX2-8O15522 239 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 SOX15O60248 233 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 FCGR3BO75015 233 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 GYPAP02724 150 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 COX5AP20674 150 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 CHRNA7P36544 502 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 KIR2DL2P43627 348 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-213ENST00000552720 TNFSF10P50591 281 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 EDDM3BP56851 147 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 MSMPQ1L6U9 139 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 RPL39P5Q59GN2 51 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 Q6ZT83 130 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 C9orf106Q8NAJ2 232 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms