RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TMEM177Q53S58 311 aa12.69□□□□□ -0.38
VPS29-204ENST00000548259 OR10K2Q6IF99 312 aa12.69□□□□□ -0.38
VPS29-204ENST00000548259 WFDC3Q8IUB2 231 aa12.69□□□□□ -0.38
VPS29-204ENST00000548259 RPP25LQ8N5L8 163 aaKnown RBP12.69□□□□□ -0.38
VPS29-204ENST00000548259 SRSF12Q8WXF0 261 aaKnown RBP12.69□□□□□ -0.38
VPS29-204ENST00000548259 ACOT12Q8WYK0 555 aa12.69□□□□□ -0.38
VPS29-204ENST00000548259 RDH8Q9NYR8 311 aa12.69□□□□□ -0.38
VPS29-204ENST00000548259 AK3Q9UIJ7 227 aa12.69□□□□□ -0.38
VPS29-204ENST00000548259 TRBV9A0A0B4J1U6 114 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 WBP4O75554 376 aaKnown RBP12.68□□□□□ -0.38
VPS29-204ENST00000548259 CD1AP06126 327 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 SCTP09683 121 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 SRMP19623 302 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 CELP19835 753 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 CBLN1P23435 193 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 UBE2KP61086 200 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 MRPS15P82914 257 aaKnown RBP12.68□□□□□ -0.38
VPS29-204ENST00000548259 PRSS8Q16651 343 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 FAM106AQ4KMX7 169 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 LGALS9CQ6DKI2 356 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 Q6ZWC4 215 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 LYG2Q86SG7 212 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 GGHQ92820 318 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 Q9N2K0 584 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 HERC2O95714 4834 aa12.68□□□□□ -0.38
VPS29-204ENST00000548259 ERICH4A6NGS2 130 aa12.67□□□□□ -0.38
VPS29-204ENST00000548259 UBE2CO00762 179 aa12.67□□□□□ -0.38
VPS29-204ENST00000548259 SPRY2O43597 315 aa12.67□□□□□ -0.38
VPS29-204ENST00000548259 C15orf32Q32M92 178 aa12.67□□□□□ -0.38
VPS29-204ENST00000548259 OR4A47Q6IF82 309 aa12.67□□□□□ -0.38
VPS29-204ENST00000548259 GPHB5Q86YW7 130 aa12.67□□□□□ -0.38
VPS29-204ENST00000548259 ADTRPQ96IZ2 230 aa12.67□□□□□ -0.38
VPS29-204ENST00000548259 NICN1Q9BSH3 213 aa12.67□□□□□ -0.38
VPS29-204ENST00000548259 OR2D2Q9H210 308 aa12.67□□□□□ -0.38
VPS29-204ENST00000548259 RBM7Q9Y580 266 aaKnown RBP12.67□□□□□ -0.38
VPS29-204ENST00000548259 TRDCB7Z8K6 153 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 RBMXL2O75526 392 aaKnown RBP12.66□□□□□ -0.38
VPS29-204ENST00000548259 OR2C1O95371 312 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 PRH1P02810 166 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 GSTT2P0CG29 244 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 GSTT2BP0CG30 244 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 C1orf100Q5SVJ3 147 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 SLC38A6Q8IZM9 456 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 TMEM61Q8N0U2 210 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 OR4A4PQ8NGN8 299 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 PHYHIPQ92561 330 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 CMSS1Q9BQ75 279 aaKnown RBP12.66□□□□□ -0.38
VPS29-204ENST00000548259 HDHD3Q9BSH5 251 aaPredicted RBP12.66□□□□□ -0.38
VPS29-204ENST00000548259 HSF4Q9ULV5 492 aa12.66□□□□□ -0.38
VPS29-204ENST00000548259 TRAV25A0A0B4J276 109 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 ZNF320A2RRD8 509 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 DPPA5A6NC42 116 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 EFCAB10A6NFE3 127 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 PPP5D1E7EU14 171 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 MYL12BO14950 172 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 OR2J3O76001 311 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 RANBP1P43487 201 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 UNC119Q13432 240 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 TM4SF20Q53R12 229 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 RBM48Q5RL73 367 aaKnown RBP12.65□□□□□ -0.38
VPS29-204ENST00000548259 RBPMS2Q6ZRY4 209 aaKnown RBP12.65□□□□□ -0.38
VPS29-204ENST00000548259 TTC9CQ8N5M4 171 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 ZNF485Q8NCK3 441 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 OR6M1Q8NGM8 313 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 OR10J5Q8NHC4 309 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 OSR1Q8TAX0 266 aaPredicted RBP12.65□□□□□ -0.38
VPS29-204ENST00000548259 GATAD1Q8WUU5 269 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 SDHAF2Q9NX18 166 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 ZNF257Q9Y2Q1 563 aa12.65□□□□□ -0.38
VPS29-204ENST00000548259 SRRM4A7MD48 611 aaKnown RBP12.64□□□□□ -0.39
VPS29-204ENST00000548259 TMEM14DPA8MWL7 114 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 DEDDO75618 318 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 SCAF4O95104 1147 aaKnown RBP12.64□□□□□ -0.39
VPS29-204ENST00000548259 CRYZL1O95825 349 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 DHFRP00374 187 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 ARL3P36405 182 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 ZNF45Q02386 682 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 MMD2Q8IY49 270 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 MS4A15Q8N5U1 240 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 STPG3Q8N7X2 389 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 OR1L6Q8NGR2 347 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 MARC2Q969Z3 335 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 CENPOQ9BU64 300 aa12.64□□□□□ -0.39
VPS29-204ENST00000548259 BET1O15155 118 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 SOCS1O15524 211 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 HLA-AP01891 365 aaKnown RBP12.63□□□□□ -0.39
VPS29-204ENST00000548259 WNT4P56705 351 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 ST3GAL4Q11206 333 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 MED22Q15528 200 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 ACSM3Q53FZ2 586 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 IDO2Q6ZQW0 420 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 UXS1Q8NBZ7 420 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 SETD9Q8NE22 299 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 PHLDA1Q8WV24 401 aaPredicted RBP12.63□□□□□ -0.39
VPS29-204ENST00000548259 CACNG8Q8WXS5 425 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 LPAR5Q9H1C0 372 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 SMPD3Q9NY59 655 aaPredicted RBP12.63□□□□□ -0.39
VPS29-204ENST00000548259 FBXL7Q9UJT9 491 aa12.63□□□□□ -0.39
VPS29-204ENST00000548259 IGKV1-6A0A0C4DH72 117 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 KIR2DL5BA0A0G2JN68 375 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms