RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ZNRD1Q9P1U0 126 aa12.93□□□□□ -0.34
PRPF40A-212ENST00000545856 FAM90A9PA6NNJ1 464 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 TNFSF12O43508 249 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 SPDEFO95238 335 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 HRASP01112 189 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 RPL30P62888 115 aaKnown RBP12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 TMEM187Q14656 261 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 SSX2Q16385 188 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 POU2AF1Q16633 256 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 LDLRAD2Q5SZI1 272 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 CLEC9AQ6UXN8 241 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 FAM219AQ8IW50 185 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 OR5R1Q8NH85 324 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 GLYATL2Q8WU03 294 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 RBPMSQ93062 196 aaKnown RBP12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 CACFD1Q9UGQ2 172 aa12.92□□□□□ -0.34
PRPF40A-212ENST00000545856 LY6G6DO95868 133 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 OR5AC1P0C628 307 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 FAM106CPP0CH98 169 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 VSIG10L2P0DP72 767 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 SRP14P37108 136 aaKnown RBP12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 BRD3OSQ6XYD6 125 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 PDZD9Q8IXQ8 264 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 OR2T10Q8NGZ9 312 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 VSTM2AQ8TAG5 236 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 CAPSLQ8WWF8 208 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 FLYWCH2Q96CP2 140 aaKnown RBP12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 TP53RKQ96S44 253 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 PITPNC1Q9UKF7 332 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 HILPDAQ9Y5L2 63 aa12.91□□□□□ -0.34
PRPF40A-212ENST00000545856 H7C2Y5 167 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 TIMM23O14925 209 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 FCGR3BO75015 233 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 NQO2P16083 231 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 REG1BP48304 166 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 PRB3Q04118 309 aaPredicted RBP12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 LRRC75BQ2VPJ9 315 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 C16orf82Q7Z2V1 217 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 MOB3BQ86TA1 216 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 C12orf45Q8N5I9 185 aaPredicted RBP12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 TMEM86BQ8N661 226 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 ASB13Q8WXK3 278 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 LSM10Q969L4 123 aaKnown RBP12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 TSNAXQ99598 290 aaKnown RBP12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 TMED3Q9Y3Q3 217 aa12.9□□□□□ -0.34
PRPF40A-212ENST00000545856 A0A0U1RQK1 487 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 VENTXO95231 258 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 MOSP00540 346 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 HLA-GP17693 338 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 VDAC1P21796 283 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 ERVK-16P61578 105 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 DIAPH2-AS1Q14236 149 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 ZNF585BQ52M93 769 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 RUSC1-AS1Q66K80 236 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 ZNF695Q8IW36 515 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 OR51J1Q9H342 316 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 RAB18Q9NP72 206 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 C1RLQ9NZP8 487 aa12.89□□□□□ -0.35
PRPF40A-212ENST00000545856 SVEP1Q4LDE5 3571 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 A0A1W2PRD5 423 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 A0A1W2PRF3 423 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 A0A1W2PRM7 423 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 DBX1A6NMT0 343 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 SLC25A6P12236 298 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 DRAXINQ8NBI3 349 aaPredicted RBP12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 OR4A5Q8NH83 315 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 SPIN2AQ99865 258 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 SPIN2BQ9BPZ2 258 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 BEX2Q9BXY8 128 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 ALG5Q9Y673 324 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 POMT1Q9Y6A1 747 aa12.88□□□□□ -0.35
PRPF40A-212ENST00000545856 A0A0A6YYJ9 748 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 A0A0B4J293 547 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 BTBD17A6NE02 478 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 M0QZK8 103 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 CRYZL1O95825 349 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 IFNA21P01568 189 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 TRAPPC2P0DI81 140 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 TRAPPC2BP0DI82 140 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 LPAR6P43657 344 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 BRWD1-AS2P59051 145 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 SLC9A3R2Q15599 337 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 CASTOR1Q8WTX7 329 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 SSMEM1Q8WWF3 244 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 RRNAD1Q96FB5 475 aaKnown RBP12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 HARBI1Q96MB7 349 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 SEC22CQ9BRL7 303 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 COA4Q9NYJ1 87 aa12.87□□□□□ -0.35
PRPF40A-212ENST00000545856 IGHV3OR16-10A0A075B7F0 116 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 MARCH11A6NNE9 402 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 SHOXO15266 292 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 RAMP3O60896 148 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 AKR1C2P52895 323 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 UBE2KP61086 200 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 VMA21Q3ZAQ7 101 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 TMEM268Q5VZI3 342 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 LIN54Q6MZP7 749 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 Q6YL49 198 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 DYNAPQ8N1N2 210 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 Q8N6K4 173 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms