RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 EIF3GO75821 320 aaKnown RBP eCLIP14.93□□□□□ -0.02
VIM-209ENST00000544301 HPRT1P00492 218 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 IGHV3-7P01780 117 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 CGB3P0DN86 165 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 CGB7P0DN87 165 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 SELLP14151 372 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 FGF7P21781 194 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 ADAM5Q6NVV9 412 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 MRGPRGQ86SM5 289 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 FAM222BQ8WU58 562 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 IFI27L2Q9H2X8 130 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 OR6C3Q9NZP0 311 aa14.93□□□□□ -0.02
VIM-209ENST00000544301 PLA2G5P39877 138 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 OR2B8PP59922 312 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 GNB2P62879 340 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 VWC2Q2TAL6 325 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 AARDQ4LEZ3 155 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 VAX2Q9UIW0 290 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 DOCK11Q5JSL3 2073 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 A0A1W2PPE3 182 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 C5orf52A6NGY3 159 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 FAM90A9PA6NNJ1 464 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 TFF3Q07654 80 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 PMS2P11Q13670 270 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 C17orf58Q2M2W7 97 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 HEPN1Q6WQI6 88 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 Q8TCH9 128 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 LHX4Q969G2 390 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 P2RX4Q99571 388 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 FAM234AQ9H0X4 552 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 NCOR1P1Q9H4R4 102 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 GCM1Q9NP62 436 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 RNF7Q9UBF6 113 aa14.92□□□□□ -0.02
VIM-209ENST00000544301 RIF1Q5UIP0 2472 aaKnown RBP14.91□□□□□ -0.02
VIM-209ENST00000544301 C15orf62A8K5M9 175 aa14.91□□□□□ -0.02
VIM-209ENST00000544301 SLC31A2O15432 143 aa14.91□□□□□ -0.02
VIM-209ENST00000544301 IGHV1-46P01743 117 aa14.91□□□□□ -0.02
VIM-209ENST00000544301 BMP5P22003 454 aa14.91□□□□□ -0.02
VIM-209ENST00000544301 SELENOVP59797 346 aa14.91□□□□□ -0.02
VIM-209ENST00000544301 UTF1Q5T230 341 aa14.91□□□□□ -0.02
VIM-209ENST00000544301 SSX9Q7RTT3 188 aa14.91□□□□□ -0.02
VIM-209ENST00000544301 ZNF98A6NK75 572 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 RBFOX2O43251 390 aaKnown RBP eCLIP14.9□□□□□ -0.02
VIM-209ENST00000544301 IFNA1P01562 189 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 IFNA17P01571 189 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 MDKP21741 143 aaPredicted RBP14.9□□□□□ -0.02
VIM-209ENST00000544301 CD40P25942 277 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 TNFAIP6P98066 277 aaPredicted RBP14.9□□□□□ -0.02
VIM-209ENST00000544301 PRAMEF5Q5TYX0 476 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 NPCDR1Q9BY65 106 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 IL19Q9UHD0 177 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 MBP02144 154 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 S100A6P06703 90 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 FFAR4Q5NUL3 377 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 STUMQ69YW2 141 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 DUX4L9Q6RFH8 374 aaPredicted RBP14.9□□□□□ -0.02
VIM-209ENST00000544301 C1orf229Q6ZS94 237 aaPredicted RBP14.9□□□□□ -0.02
VIM-209ENST00000544301 LEAP2Q969E1 77 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 SDSLQ96GA7 329 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 SIRT7Q9NRC8 400 aa14.9□□□□□ -0.02
VIM-209ENST00000544301 DSCAMO60469 2012 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 VKORC1L1Q8N0U8 176 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 OR10G9Q8NGN4 311 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 OR10G7Q8NGN6 311 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 OR4A16Q8NH70 328 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 S1PR3Q99500 378 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 SLC25A22Q9H936 323 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 KBTBD11-OT1A0A1B0GTJ5 212 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 CTXND1A0A1B0GTU2 59 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 CXorf65A6NEN9 183 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 B4DEV8 164 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 ITGB1BP1O14713 200 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 CYB5R3P00387 301 aaPredicted RBP14.89□□□□□ -0.03
VIM-209ENST00000544301 CCKARP32238 428 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 SPCS3P61009 180 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 ZNF343Q6P1L6 599 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 RBMS3Q6XE24 437 aaKnown RBP14.89□□□□□ -0.03
VIM-209ENST00000544301 C1QL4Q86Z23 238 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 GFOD1Q9NXC2 390 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 GAB2Q9UQC2 676 aa14.89□□□□□ -0.03
VIM-209ENST00000544301 UBE2CO00762 179 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 HMGB3O15347 200 aaKnown RBP14.88□□□□□ -0.03
VIM-209ENST00000544301 KIR2DS2P43631 304 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 RAB7AP51149 207 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 ERVK-16P61578 105 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 ELOBQ15370 118 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 CT45A1Q5HYN5 189 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 ZNF709Q8N972 641 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 CT45A3Q8NHU0 189 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 Q8WTZ3 238 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 DDB2Q92466 427 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 GAFA1Q96PS6 74 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 C12orf57Q99622 126 aa14.88□□□□□ -0.03
VIM-209ENST00000544301 MKRN2OSH3BPM6 223 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 LY86O95711 162 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 NQO2P16083 231 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 NBL1P41271 181 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 PNRC1Q12796 327 aaPredicted RBP14.87□□□□□ -0.03
VIM-209ENST00000544301 DEFB108BQ8NET1 73 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 OR52E5Q8NH55 327 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms