RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 FAM46BQ96A09 425 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 TLCD1Q96CP7 247 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 C10orf35Q96D05 121 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 NSMCE2Q96MF7 247 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 NDUFAF3Q9BU61 184 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 RNF126Q9BV68 326 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 SCRT1Q9BWW7 348 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 C6orf62Q9GZU0 229 aaPredicted RBP3.47□□□□□ -1.85
LIMS1-214ENST00000542845 C11orf68Q9H3H3 251 aaKnown RBP3.47□□□□□ -1.85
LIMS1-214ENST00000542845 GORASP2Q9H8Y8 452 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 REEP1Q9H902 201 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 TMBIM4Q9HC24 238 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 RAB9BQ9NP90 201 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 MDFICQ9P1T7 246 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 HSPB7Q9UBY9 170 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 GNG8Q9UK08 70 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 WASHC3Q9Y3C0 194 aa3.47□□□□□ -1.85
LIMS1-214ENST00000542845 SAMHD1Q9Y3Z3 626 aaKnown RBP3.47□□□□□ -1.85
LIMS1-214ENST00000542845 IGHV3-35A0A0C4DH35 117 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 MCRIP1C9JLW8 97 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 M0R129 80 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 LGALS9O00182 355 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 NDUFAB1O14561 156 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 SULT1B1O43704 296 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 EDF1O60869 148 aaKnown RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 OR2J3O76001 311 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 CDRT1O95170 752 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 CA1P00915 261 aaPredicted RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 MBPP02686 304 aaPredicted RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 MAS1P04201 325 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 UBCP0CG48 685 aaKnown RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 SERPINA2P20848 420 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 MC5RP33032 325 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 TFPI2P48307 235 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 TMEM187Q14656 261 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 TP53I3Q53FA7 332 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 C6orf183Q5T699 404 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 Q5VSD8 79 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 TMEM244Q5VVB8 128 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 TMEM268Q5VZI3 342 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 ELP2Q6IA86 826 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 CLEC19AQ6UXS0 136 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 ZNF497Q6ZNH5 498 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 Q6ZNX1 250 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 ZNF833PQ6ZTB9 187 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 ZBTB8BQ8NAP8 495 aaPredicted RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 ADAD2Q8NCV1 583 aaKnown RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 SETD9Q8NE22 299 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 OR2AK2Q8NG84 335 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 OR51A4Q8NGJ6 313 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 OR52N1Q8NH53 320 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 GIPC3Q8TF64 312 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 FRZBQ92765 325 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 ABHD14BQ96IU4 210 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 S100A13Q99584 98 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 TSNAXQ99598 290 aaKnown RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 TEX12Q9BXU0 123 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 TAF9BQ9HBM6 251 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 CLN6Q9NWW5 311 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 KCNIP1Q9NZI2 227 aa3.46□□□□□ -1.86
LIMS1-214ENST00000542845 RCC2Q9P258 522 aaKnown RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 ZNF230Q9UIE0 474 aaPredicted RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 EXOSC1Q9Y3B2 195 aaKnown RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 APOBP04114 4563 aaKnown RBP3.46□□□□□ -1.86
LIMS1-214ENST00000542845 IGKV3-7A0A075B6H7 116 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.45□□□□□ -1.86
LIMS1-214ENST00000542845 TRAV25A0A0B4J276 109 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 IGHV4-28A0A0C4DH34 117 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 A0A1W2PQL4 384 aaPredicted RBP3.45□□□□□ -1.86
LIMS1-214ENST00000542845 TMEM213A2RRL7 107 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 OR5H14A6NHG9 310 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 FAM223BA6NKX1 122 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 H0YJW9 148 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 GABRPO00591 440 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 GNGT2O14610 69 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 ARPC2O15144 300 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 RBBP9O75884 186 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 SMR3BP02814 79 aaPredicted RBP3.45□□□□□ -1.86
LIMS1-214ENST00000542845 IGKV1-16P04430 117 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 OR9G9P0C7N8 305 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 RPA2P15927 270 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 PRKACGP22612 351 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 ATP6V1E1P36543 226 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 MAP2K4P45985 399 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 MFAP4P55083 255 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 CDK5Q00535 292 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 PAX5Q02548 391 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 TNXAQ16473 311 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 TMEM30BQ3MIR4 351 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 ODF3L2Q3SX64 289 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 OR2T5Q6IEZ7 315 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 FAM220AQ7Z4H9 259 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 FAM223AQ8IWN6 122 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 OR10H4Q8NGA5 316 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 OR5D14Q8NGL3 314 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 OR13C5Q8NGS8 318 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 OR2T29Q8NH02 315 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 IL1F10Q8WWZ1 152 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 NSL1Q96IY1 281 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 TMEM68Q96MH6 324 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms