RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 DANCRP0C864 163 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 DLX1P56177 255 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 PJVKQ0ZLH3 352 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 MSMO1Q15800 293 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 TMEM200BQ69YZ2 307 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 SLC25A24Q6NUK1 477 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 QTRT1Q9BXR0 403 aaKnown RBP11.94□□□□□ -0.5
CLIP1-216ENST00000541410 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-216ENST00000541410 PIGBOS1A0A0B4J2F0 54 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 hADV38S2A0JD32 116 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 ZNF729A6NN14 1252 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-216ENST00000541410 NUPL2O15504 423 aaKnown RBP11.94□□□□□ -0.5
CLIP1-216ENST00000541410 ADCYAP1P18509 176 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 BAXQ07812 192 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 BTNL8Q6UX41 500 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 S1PR3Q99500 378 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 ATP5SQ99766 215 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 RSG1Q9BU20 258 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 FBXO7Q9Y3I1 522 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 ASH1LQ9NR48 2969 aaKnown RBP11.94□□□□□ -0.5
CLIP1-216ENST00000541410 RAB19A4D1S5 217 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 BLOC1S1P78537 153 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 MRPS11P82912 194 aaKnown RBP11.93□□□□□ -0.5
CLIP1-216ENST00000541410 BTN1A1Q13410 526 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 THNSL2Q86YJ6 484 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 HSPB7Q9UBY9 170 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 ACACBO00763 2458 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 NDUFB3O43676 98 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 AVPI1Q5T686 147 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 ZNF439Q8NDP4 499 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 ZNF251Q9BRH9 671 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 PARP11Q9NR21 331 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 LINC00312Q9Y6C7 94 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 MED13LQ71F56 2210 aa11.93□□□□□ -0.5
CLIP1-216ENST00000541410 CEBPZOSA8MTT3 80 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 C9JQL5 133 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 RAB29O14966 203 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 GPR37O15354 613 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 EFNB3Q15768 340 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 HFEQ30201 348 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 ZNF672Q499Z4 452 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-216ENST00000541410 LILRB2Q8N423 598 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 ZNF383Q8NA42 475 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 OR4C12Q96R67 309 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 COA4Q9NYJ1 87 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 RPUSD1Q9UJJ7 312 aaKnown RBP11.92□□□□□ -0.5
CLIP1-216ENST00000541410 TMEM218A2RU14 115 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 EIF3GO75821 320 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLIP1-216ENST00000541410 TSPAN15O95858 294 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 HPRT1P00492 218 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 IFNA17P01571 189 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 REG1BP48304 166 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 RAB7AP51149 207 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 F2RL1P55085 397 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 DTD1Q8TEA8 209 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 LRRC46Q96FV0 321 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 ZNF714Q96N38 554 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 NCOR1P1Q9H4R4 102 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 PRELID3BQ9Y3B1 194 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 CACNA1BQ00975 2339 aa11.92□□□□□ -0.5
CLIP1-216ENST00000541410 TNFRSF13BO14836 293 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-216ENST00000541410 TFF3Q07654 80 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 LRRC10Q5BKY1 277 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 CD300LFQ8TDQ1 290 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 DDB2Q92466 427 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 CORO2AQ92828 525 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 PLXNB1O43157 2135 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 ATG12O94817 140 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 MYOD1P15172 320 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 LOXP28300 417 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-216ENST00000541410 GUCA2BQ16661 112 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 IL34Q6ZMJ4 242 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 ZNF525Q8N782 197 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 NUP50Q9UKX7 468 aa11.91□□□□□ -0.5
CLIP1-216ENST00000541410 UBE2L5PA0A1B0GUS4 154 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 F8W036 122 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 IGKV1-16P04430 117 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 M6PRP20645 277 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 GNLYP22749 145 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 DIAPH2-AS1Q14236 149 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 UQCC3Q6UW78 93 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 TCTEX1D1Q8N7M0 179 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 RAB9BQ9NP90 201 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 TMEM140Q9NV12 185 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 UQCC1Q9NVA1 299 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 LAMP3Q9UQV4 416 aa11.9□□□□□ -0.5
CLIP1-216ENST00000541410 FAM90A26D6RGX4 464 aa11.9□□□□□ -0.51
CLIP1-216ENST00000541410 RNASEK-C17orf49H0YIS7 233 aa11.9□□□□□ -0.51
CLIP1-216ENST00000541410 IFNA5P01569 189 aa11.9□□□□□ -0.51
CLIP1-216ENST00000541410 CCL20P78556 96 aa11.9□□□□□ -0.51
CLIP1-216ENST00000541410 SLC25A48Q6ZT89 311 aaKnown RBP11.9□□□□□ -0.51
CLIP1-216ENST00000541410 OR4A16Q8NH70 328 aa11.9□□□□□ -0.51
CLIP1-216ENST00000541410 GAL3ST2Q9H3Q3 398 aa11.9□□□□□ -0.51
CLIP1-216ENST00000541410 VSIRQ9H7M9 311 aa11.9□□□□□ -0.51
CLIP1-216ENST00000541410 OPN1MWP04001 364 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 OPN1MW2P0DN77 364 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 OPN1MW3P0DN78 364 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 ERVK-16P61578 105 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 SLC38A11Q08AI6 406 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 RHOVQ96L33 236 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms