RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PRR30Q53SZ7 412 aaPredicted RBP11.41□□□□□ -0.58
RTN3-210ENST00000540798 ZNF788Q6ZQV5 615 aa11.41□□□□□ -0.58
RTN3-210ENST00000540798 TCF23Q7RTU1 214 aa11.41□□□□□ -0.58
RTN3-210ENST00000540798 KDF1Q8NAX2 398 aaPredicted RBP11.41□□□□□ -0.58
RTN3-210ENST00000540798 DIRC2Q96SL1 478 aa11.41□□□□□ -0.58
RTN3-210ENST00000540798 SSX3Q99909 188 aa11.41□□□□□ -0.58
RTN3-210ENST00000540798 DYSFO75923 2080 aa11.41□□□□□ -0.58
RTN3-210ENST00000540798 FAM90A9PA6NNJ1 464 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 IFNA5P01569 189 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 GPR12P47775 334 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 LINC00205P59089 165 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 HBG1P69891 147 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 HBG2P69892 147 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 HABP2Q14520 560 aaPredicted RBP11.4□□□□□ -0.58
RTN3-210ENST00000540798 NCR3LG1Q68D85 454 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 PBDC1Q9BVG4 233 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 APC2O95996 2303 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 MED19A0JLT2 244 aaPredicted RBP11.4□□□□□ -0.58
RTN3-210ENST00000540798 RBFOX2O43251 390 aaKnown RBP eCLIP11.4□□□□□ -0.58
RTN3-210ENST00000540798 CYB5R3P00387 301 aaPredicted RBP11.4□□□□□ -0.58
RTN3-210ENST00000540798 PPT1P50897 306 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 GNG12Q9UBI6 72 aa11.4□□□□□ -0.58
RTN3-210ENST00000540798 CACNA1DQ01668 2161 aa11.4□□□□□ -0.59
RTN3-210ENST00000540798 TRAV1-1A0A0B4J248 108 aa11.4□□□□□ -0.59
RTN3-210ENST00000540798 PMS2P5A8MQ11 134 aa11.4□□□□□ -0.59
RTN3-210ENST00000540798 CCL20P78556 96 aa11.4□□□□□ -0.59
RTN3-210ENST00000540798 BSPH1Q075Z2 132 aa11.4□□□□□ -0.59
RTN3-210ENST00000540798 DUX4L9Q6RFH8 374 aaPredicted RBP11.4□□□□□ -0.59
RTN3-210ENST00000540798 ZGRF1Q86YA3 2104 aa11.4□□□□□ -0.59
RTN3-210ENST00000540798 CORO2AQ92828 525 aa11.4□□□□□ -0.59
RTN3-210ENST00000540798 RAB9BQ9NP90 201 aa11.4□□□□□ -0.59
RTN3-210ENST00000540798 KBTBD11-OT1A0A1B0GTJ5 212 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 WFDC8Q8IUA0 241 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 DDB2Q92466 427 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 OR4C12Q96R67 309 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 GFOD1Q9NXC2 390 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 KIAA1456Q9P272 454 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 CLN8Q9UBY8 286 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 MARCH11A6NNE9 402 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 SLC31A2O15432 143 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 EDDM3BP56851 147 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 LTC4SQ16873 150 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 SPANXN5Q5MJ07 72 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 THNSL2Q86YJ6 484 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 WDR61Q9GZS3 305 aaKnown RBP11.39□□□□□ -0.59
RTN3-210ENST00000540798 ZNF665Q9H7R5 613 aa11.39□□□□□ -0.59
RTN3-210ENST00000540798 C17orf100A8MU93 164 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 HPRT1P00492 218 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 PDLIM3Q53GG5 364 aaPredicted RBP11.38□□□□□ -0.59
RTN3-210ENST00000540798 AKR1C8PQ5T2L2 129 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 H2BFWTQ7Z2G1 175 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 CENPVQ7Z7K6 275 aaPredicted RBP11.38□□□□□ -0.59
RTN3-210ENST00000540798 ZNF439Q8NDP4 499 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 EIF5A2Q9GZV4 153 aaKnown RBP11.38□□□□□ -0.59
RTN3-210ENST00000540798 S100A8P05109 93 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 OR4A8P0C604 315 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 C1orf229Q6ZS94 237 aaPredicted RBP11.38□□□□□ -0.59
RTN3-210ENST00000540798 TGIF2LYQ8IUE0 185 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 TGIF2LXQ8IUE1 241 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.38□□□□□ -0.59
RTN3-210ENST00000540798 R3HDM4Q96D70 268 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 SLC35B3Q9H1N7 401 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 RAB7AP51149 207 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 TLE4Q04727 773 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 SLC38A11Q08AI6 406 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 TMEM30BQ3MIR4 351 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 UTF1Q5T230 341 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 PLCE1Q9P212 2302 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 FBXO7Q9Y3I1 522 aa11.38□□□□□ -0.59
RTN3-210ENST00000540798 NQO2P16083 231 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 SPCS3P61009 180 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 SERF2P84101 59 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 SCGB1C1Q8TD33 95 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 DTD1Q8TEA8 209 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 CIB3Q96Q77 187 aaPredicted RBP11.37□□□□□ -0.59
RTN3-210ENST00000540798 RSG1Q9BU20 258 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 TIMM9Q9Y5J7 89 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 RBFOX3A6NFN3 312 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 OR9G9P0C7N8 305 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 TNFRSF1AP19438 455 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 KIR2DS2P43631 304 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 ATP6V1FQ16864 119 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 VWC2Q2TAL6 325 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 RPL39P5Q59GN2 51 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 CT45A1Q5HYN5 189 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 CT45A3Q8NHU0 189 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 VKORC1Q9BQB6 163 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 ACACAQ13085 2346 aa11.37□□□□□ -0.59
RTN3-210ENST00000540798 TRGV10A0A0A0MS01 117 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 TCAPO15273 167 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 ZG16O60844 167 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 GYPAP02724 150 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 AKR1C3P42330 323 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 TMPRSS3P57727 454 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 TAS2R60P59551 318 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 RBPJQ06330 500 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 NCMAPQ5T1S8 102 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 MBD3L1Q8WWY6 194 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 RBMXL1Q96E39 390 aaKnown RBP11.36□□□□□ -0.59
RTN3-210ENST00000540798 MISP3Q96FF7 219 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms