RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 DBX1A6NMT0 343 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 RNF212BA8MTL3 300 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 TCF21O43680 179 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 PRAF2O60831 178 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 RAMP3O60896 148 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 IGLV2-23P01705 113 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 IGKV1-16P04430 117 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 H2AFB2P0C5Z0 115 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 ANXA7P20073 488 aaKnown RBP8.45□□□□□ -1.06
VPS33A-204ENST00000540669 PAX6P26367 422 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 KIR2DS2P43631 304 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 REG1BP48304 166 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 CATR1Q13166 79 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 DHRS2Q13268 280 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 TMEM187Q14656 261 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 SSX2Q16385 188 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 DEFB112Q30KQ8 113 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 KRTAP21-3Q3LHN1 58 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 PLET1Q6UQ28 207 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 GLDNQ6ZMI3 551 aaPredicted RBP8.45□□□□□ -1.06
VPS33A-204ENST00000540669 IL17RELQ6ZVW7 336 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 IL22RA2Q969J5 263 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 COMMD9Q9P000 198 aa8.45□□□□□ -1.06
VPS33A-204ENST00000540669 C2CD3Q4AC94 2353 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 TRAV6A0A075B6T7 132 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 A0A0B4J2A0 478 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 C3orf85A0A1B0GTC6 90 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 MDFIC2A0A1B0GVS7 189 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 C9orf170A2RU37 121 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 INMT-MINDY4F8WBC2 141 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 TNFSF12O43508 249 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 NDUFA3O95167 84 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 SPDEFO95238 335 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 SFT2D2O95562 160 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 DUS4LO95620 317 aaKnown RBP8.44□□□□□ -1.06
VPS33A-204ENST00000540669 CDS2O95674 445 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 CRYGBP07316 175 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 FGF2P09038 288 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 OR5AC1P0C628 307 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 OR4E1P0C645 316 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 RRASP10301 218 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 RPA2P15927 270 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 MC5RP33032 325 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 RAB13P51153 203 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 LGALS4P56470 323 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 MRGPRG-AS1Q2M3A8 158 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 LRRC75BQ2VPJ9 315 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 ANKRD55Q3KP44 614 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 AARDQ4LEZ3 155 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 Q6YL49 198 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 Q6ZNX1 250 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 LYG2Q86SG7 212 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 TMEM86BQ8N661 226 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 DRAXINQ8NBI3 349 aaPredicted RBP8.44□□□□□ -1.06
VPS33A-204ENST00000540669 CD300LFQ8TDQ1 290 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 MITD1Q8WV92 249 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 PLEKHA2Q9HB19 425 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 PLSCR3Q9NRY6 295 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 SHPKQ9UHJ6 478 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 TCF19Q9Y242 345 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 WASHC3Q9Y3C0 194 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 RBM7Q9Y580 266 aaKnown RBP8.44□□□□□ -1.06
VPS33A-204ENST00000540669 HILPDAQ9Y5L2 63 aa8.44□□□□□ -1.06
VPS33A-204ENST00000540669 A0A0A6YYJ9 748 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 A6NDX4 124 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 SNRPGP15A8MWD9 76 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 CLDN34H7C241 214 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 S1PR2O95136 353 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 IER3P46695 156 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 SSBP2P81877 361 aaPredicted RBP8.43□□□□□ -1.06
VPS33A-204ENST00000540669 ABCA11PQ4W5N1 156 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 NMSQ5H8A3 153 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 TMED4Q7Z7H5 227 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 SPAG16Q8N0X2 631 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 PUSL1Q8N0Z8 303 aaKnown RBP8.43□□□□□ -1.06
VPS33A-204ENST00000540669 FAM71E2Q8N5Q1 922 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 NPBQ8NG41 125 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 OR51H1Q8NH63 302 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 OR4S2Q8NH73 311 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 OSR1Q8TAX0 266 aaPredicted RBP8.43□□□□□ -1.06
VPS33A-204ENST00000540669 TCTEX1D2Q8WW35 142 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 TMEM158Q8WZ71 300 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 SEC22AQ96IW7 307 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 EAF1Q96JC9 268 aaPredicted RBP8.43□□□□□ -1.06
VPS33A-204ENST00000540669 RNF5Q99942 180 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 MS4A7Q9GZW8 240 aaPredicted RBP8.43□□□□□ -1.06
VPS33A-204ENST00000540669 SLC35D1Q9NTN3 355 aa8.43□□□□□ -1.06
VPS33A-204ENST00000540669 JMJD1CQ15652 2540 aa8.42□□□□□ -1.06
VPS33A-204ENST00000540669 ATRQ13535 2644 aa8.42□□□□□ -1.06
VPS33A-204ENST00000540669 TEX13DA0A0J9YY54 714 aaPredicted RBP8.42□□□□□ -1.06
VPS33A-204ENST00000540669 DUXBA0A1W2PPF3 345 aa8.42□□□□□ -1.06
VPS33A-204ENST00000540669 SRRM4A7MD48 611 aaKnown RBP8.42□□□□□ -1.06
VPS33A-204ENST00000540669 IGKV1-5P01602 117 aa8.42□□□□□ -1.06
VPS33A-204ENST00000540669 HLA-AP01891 365 aaKnown RBP8.42□□□□□ -1.06
VPS33A-204ENST00000540669 APOA2P02652 100 aa8.42□□□□□ -1.06
VPS33A-204ENST00000540669 SNRNP70P08621 437 aaKnown RBP8.42□□□□□ -1.06
VPS33A-204ENST00000540669 HLA-GP17693 338 aa8.42□□□□□ -1.06
VPS33A-204ENST00000540669 S100GP29377 79 aa8.42□□□□□ -1.06
VPS33A-204ENST00000540669 SRPXP78539 464 aa8.42□□□□□ -1.06
VPS33A-204ENST00000540669 TATDN3Q17R31 274 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms