RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 TP53TG5Q9Y2B4 290 aa17■□□□□ 0.31
TMEM260-203ENST00000539559 FOSL1P15407 271 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 EDDM3BP56851 147 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 CYB5R2Q6BCY4 276 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 ZNF709Q8N972 641 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 FOXJ2Q9P0K8 574 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 C12orf77C9JDV5 145 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 WNT2P09544 360 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 GCH1P30793 250 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 LINC01551Q86U37 167 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 RFESDQ8TAC1 157 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 ANAPC16Q96DE5 110 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 SNHG12Q9BXW3 62 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 MANBALQ9NQG1 85 aa16.99■□□□□ 0.31
TMEM260-203ENST00000539559 A0A1W2PNU3 283 aaPredicted RBP16.98■□□□□ 0.31
TMEM260-203ENST00000539559 GRIFINA4D1Z8 144 aa16.98■□□□□ 0.31
TMEM260-203ENST00000539559 CDC34P49427 236 aaPredicted RBP16.98■□□□□ 0.31
TMEM260-203ENST00000539559 LTC4SQ16873 150 aa16.98■□□□□ 0.31
TMEM260-203ENST00000539559 MBNL3Q9NUK0 354 aaKnown RBP16.98■□□□□ 0.31
TMEM260-203ENST00000539559 TRAPPC1Q9Y5R8 145 aa16.98■□□□□ 0.31
TMEM260-203ENST00000539559 PIGBOS1A0A0B4J2F0 54 aa16.98■□□□□ 0.31
TMEM260-203ENST00000539559 SERPINA7P05543 415 aa16.98■□□□□ 0.31
TMEM260-203ENST00000539559 MOB1BQ7L9L4 216 aa16.98■□□□□ 0.31
TMEM260-203ENST00000539559 GBGT1Q8N5D6 347 aa16.98■□□□□ 0.31
TMEM260-203ENST00000539559 ZNF645Q8N7E2 425 aa16.98■□□□□ 0.31
TMEM260-203ENST00000539559 MRGPRDQ8TDS7 321 aa16.98■□□□□ 0.31
TMEM260-203ENST00000539559 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.98■□□□□ 0.31
TMEM260-203ENST00000539559 FAM90A26D6RGX4 464 aa16.97■□□□□ 0.31
TMEM260-203ENST00000539559 RTL8AQ9BWD3 113 aa16.97■□□□□ 0.31
TMEM260-203ENST00000539559 TTTY12Q9BZ98 90 aa16.97■□□□□ 0.31
TMEM260-203ENST00000539559 TTC28Q96AY4 2481 aa16.97■□□□□ 0.31
TMEM260-203ENST00000539559 RBFOX2O43251 390 aaKnown RBP eCLIP16.97■□□□□ 0.31
TMEM260-203ENST00000539559 NUTF2P61970 127 aaKnown RBP16.97■□□□□ 0.31
TMEM260-203ENST00000539559 MSMO1Q15800 293 aa16.97■□□□□ 0.31
TMEM260-203ENST00000539559 DHRS13Q6UX07 377 aa16.97■□□□□ 0.31
TMEM260-203ENST00000539559 CISD2Q8N5K1 135 aaKnown RBP16.97■□□□□ 0.31
TMEM260-203ENST00000539559 LOC400499M0QZD8 3231 aa16.97■□□□□ 0.31
TMEM260-203ENST00000539559 LINC00473A8K010 186 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 P0C879 139 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 RAC2P15153 192 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 SPCS3P61009 180 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 ERVK11-1P61568 191 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 Q6ZR03 302 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 TMEM251Q8N6I4 163 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 FKBP11Q9NYL4 201 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 MRPS18CQ9Y3D5 142 aaKnown RBP16.96■□□□□ 0.31
TMEM260-203ENST00000539559 SH2D1BO14796 132 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 HAND1O96004 215 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 CD82P27701 267 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 ACOT6Q3I5F7 207 aaPredicted RBP16.96■□□□□ 0.31
TMEM260-203ENST00000539559 KCNIP4Q6PIL6 250 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 GALMQ96C23 342 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 NEU1Q99519 415 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 FAM173AQ9BQD7 235 aa16.96■□□□□ 0.31
TMEM260-203ENST00000539559 MRPL37Q9BZE1 423 aaKnown RBP16.96■□□□□ 0.31
TMEM260-203ENST00000539559 POLR3KQ9Y2Y1 108 aaPredicted RBP16.96■□□□□ 0.31
TMEM260-203ENST00000539559 RNF212BA8MTL3 300 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 C21orf140B9A014 251 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 HBZP02008 142 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 SSTR5P35346 364 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 SRP14P37108 136 aaKnown RBP16.95■□□□□ 0.3
TMEM260-203ENST00000539559 THBS3P49746 956 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 RPL15P61313 204 aaKnown RBP16.95■□□□□ 0.3
TMEM260-203ENST00000539559 PLGLB1Q02325 96 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 H2BFWTQ7Z2G1 175 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 DCTN5Q9BTE1 182 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 WIPI2Q9Y4P8 454 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 TRBV20OR9-2A0A075B6H5 130 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 IGHV3-13P01766 116 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 IGHV3-7P01780 117 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 MBP02144 154 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 PPP1CBP62140 327 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 Q8N7P7 452 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 IMMP2LQ96T52 175 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 QTRT1Q9BXR0 403 aaKnown RBP16.95■□□□□ 0.3
TMEM260-203ENST00000539559 FAM234AQ9H0X4 552 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 KCNIP1Q9NZI2 227 aa16.95■□□□□ 0.3
TMEM260-203ENST00000539559 MLNRO43193 412 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 IQCJQ1A5X6 159 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 HES3Q5TGS1 186 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 SGMS2Q8NHU3 365 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 TYMSP04818 313 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 GABRA2P47869 451 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 OR1C1Q15619 314 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 ATP6V1FQ16864 119 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 BEND2Q8NDZ0 799 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 GP6Q9HCN6 339 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 METRNQ9UJH8 293 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 KNTC1P50748 2209 aa16.94■□□□□ 0.3
TMEM260-203ENST00000539559 C15orf62A8K5M9 175 aa16.93■□□□□ 0.3
TMEM260-203ENST00000539559 ZNF705FA8MVS1 300 aaPredicted RBP16.93■□□□□ 0.3
TMEM260-203ENST00000539559 ZNF705DP0CH99 300 aaPredicted RBP16.93■□□□□ 0.3
TMEM260-203ENST00000539559 ZNF705BP0CI00 300 aaPredicted RBP16.93■□□□□ 0.3
TMEM260-203ENST00000539559 ADMP35318 185 aa16.93■□□□□ 0.3
TMEM260-203ENST00000539559 TDRG1Q3Y452 100 aa16.93■□□□□ 0.3
TMEM260-203ENST00000539559 VKORC1L1Q8N0U8 176 aa16.93■□□□□ 0.3
TMEM260-203ENST00000539559 B4GALT7Q9UBV7 327 aa16.93■□□□□ 0.3
TMEM260-203ENST00000539559 ZFHX4Q86UP3 3567 aa16.93■□□□□ 0.3
TMEM260-203ENST00000539559 EIF4EBP1Q13541 118 aaPredicted RBP16.93■□□□□ 0.3
TMEM260-203ENST00000539559 ZNF146Q15072 292 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 223.5 ms