RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 ADTRPQ96IZ2 230 aa16.53■□□□□ 0.24
TNFRSF1A-205ENST00000534885 CACNG5Q9UF02 275 aa16.53■□□□□ 0.24
TNFRSF1A-205ENST00000534885 TNFSF18Q9UNG2 199 aa16.53■□□□□ 0.24
TNFRSF1A-205ENST00000534885 RBFOX2O43251 390 aaKnown RBP eCLIP16.52■□□□□ 0.242e-7■■■■□ 22.6
TNFRSF1A-205ENST00000534885 KLRD1Q13241 179 aa16.52■□□□□ 0.24
TNFRSF1A-205ENST00000534885 CXorf66Q5JRM2 361 aaPredicted RBP16.52■□□□□ 0.24
TNFRSF1A-205ENST00000534885 PRSS54Q6PEW0 395 aa16.52■□□□□ 0.24
TNFRSF1A-205ENST00000534885 DCUN1D4Q92564 292 aa16.52■□□□□ 0.24
TNFRSF1A-205ENST00000534885 TNFRSF14Q92956 283 aa16.52■□□□□ 0.24
TNFRSF1A-205ENST00000534885 TMEM186Q96B77 213 aa16.52■□□□□ 0.24
TNFRSF1A-205ENST00000534885 HEXA-AS1Q9H8Q6 139 aa16.52■□□□□ 0.24
TNFRSF1A-205ENST00000534885 PLEKHA2Q9HB19 425 aa16.52■□□□□ 0.24
TNFRSF1A-205ENST00000534885 NAV2Q8IVL1 2488 aa16.52■□□□□ 0.23
TNFRSF1A-205ENST00000534885 A0A1B0GU03 582 aa16.52■□□□□ 0.23
TNFRSF1A-205ENST00000534885 MARCH11A6NNE9 402 aa16.52■□□□□ 0.23
TNFRSF1A-205ENST00000534885 K7EPK0 472 aa16.52■□□□□ 0.23
TNFRSF1A-205ENST00000534885 HPRT1P00492 218 aa16.52■□□□□ 0.23
TNFRSF1A-205ENST00000534885 P0C879 139 aa16.52■□□□□ 0.23
TNFRSF1A-205ENST00000534885 AP2S1P53680 142 aaPredicted RBP16.52■□□□□ 0.23
TNFRSF1A-205ENST00000534885 FAM71E2Q8N5Q1 922 aa16.52■□□□□ 0.23
TNFRSF1A-205ENST00000534885 MFFQ9GZY8 342 aa16.52■□□□□ 0.23
TNFRSF1A-205ENST00000534885 MMP24Q9Y5R2 645 aa16.52■□□□□ 0.23
TNFRSF1A-205ENST00000534885 LINC00862A6NCI5 91 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 RNF222A6NCQ9 220 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 LEUTXA8MZ59 168 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 L7N2F9 121 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 PITX3O75364 302 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 FOXH1O75593 365 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 DEDDO75618 318 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 CRYZL1O95825 349 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 PET100P0DJ07 73 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 LYL1P12980 280 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 PRTN3P24158 256 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 KIR2DS2P43631 304 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 PRRX1P54821 245 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 CLEC12BQ2HXU8 276 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 KIR3DL3Q8N743 410 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 BEND2Q8NDZ0 799 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 OR4P4Q8NGL7 312 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 R3HDM4Q96D70 268 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 PRELID1Q9Y255 219 aa16.51■□□□□ 0.23
TNFRSF1A-205ENST00000534885 SLC25A6P12236 298 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 NKX2-1P43699 371 aaPredicted RBP16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 SMCO1Q147U7 214 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 VMO1Q7Z5L0 202 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 VKORC1L1Q8N0U8 176 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 OR13D1Q8NGV5 346 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 OR4S2Q8NH73 311 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 KPTNQ9Y664 436 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 BUB1B-PAK6H3BSN5 160 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 ST8SIA3O43173 380 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 IGKV1-16P04430 117 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 HCP5Q6MZN7 132 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 FAM71F2Q6NXP2 309 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 C1orf122Q6ZSJ8 110 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 SSX9Q7RTT3 188 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 PDZD9Q8IXQ8 264 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 SIRPDQ9H106 197 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 RCL1Q9Y2P8 373 aaKnown RBP16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 POMT1Q9Y6A1 747 aa16.5■□□□□ 0.23
TNFRSF1A-205ENST00000534885 DSCR9P59020 149 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 POLR2GP62487 172 aaKnown RBP eCLIP16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 TGIF2LXQ8IUE1 241 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 NABP2Q9BQ15 211 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 MAGT1Q9H0U3 335 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 SLC35D1Q9NTN3 355 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 MSGN1A6NI15 193 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 H0YJW9 148 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 ATG12O94817 140 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 IL3RAP26951 378 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 LDLRAD2Q5SZI1 272 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 H2BFWTQ7Z2G1 175 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 OR11H6Q8NGC7 330 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 OR5AN1Q8NGI8 311 aa16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 UNKLQ9H9P5 680 aaKnown RBP16.49■□□□□ 0.23
TNFRSF1A-205ENST00000534885 CSMD1Q96PZ7 3565 aa16.48■□□□□ 0.23
TNFRSF1A-205ENST00000534885 RLN2P04090 185 aa16.48■□□□□ 0.23
TNFRSF1A-205ENST00000534885 ID3Q02535 119 aa16.48■□□□□ 0.23
TNFRSF1A-205ENST00000534885 DEFB113Q30KQ7 82 aa16.48■□□□□ 0.23
TNFRSF1A-205ENST00000534885 OR8H3Q8N146 312 aa16.48■□□□□ 0.23
TNFRSF1A-205ENST00000534885 PCGF1Q9BSM1 259 aa16.48■□□□□ 0.23
TNFRSF1A-205ENST00000534885 ARL6Q9H0F7 186 aa16.48■□□□□ 0.23
TNFRSF1A-205ENST00000534885 POLR3KQ9Y2Y1 108 aaPredicted RBP16.48■□□□□ 0.23
TNFRSF1A-205ENST00000534885 ARG1P05089 322 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 MMP9P14780 707 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 NQO2P16083 231 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 RTL8BQ17RB0 113 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 MIDNQ504T8 468 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 TMUB2Q71RG4 321 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 INO80EQ8NBZ0 244 aaPredicted RBP16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 DMBX1Q8NFW5 382 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 AUP1Q9Y679 476 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 RNASEK-C17orf49H0YIS7 233 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 HOXB4P17483 251 aaPredicted RBP16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 S100A11P31949 105 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 ACOT7LQ6ZUV0 252 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 BEX4Q9NWD9 120 aaPredicted RBP16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 NSG2Q9Y328 171 aa16.47■□□□□ 0.23
TNFRSF1A-205ENST00000534885 A0A1W2PRD5 423 aa16.46■□□□□ 0.23
TNFRSF1A-205ENST00000534885 A0A1W2PRF3 423 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms