RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CLCF1Q9UBD9 225 aa16.08■□□□□ 0.17
VPS28-213ENST00000530983 CDX4O14627 284 aaPredicted RBP16.08■□□□□ 0.16
VPS28-213ENST00000530983 USF2Q15853 346 aaPredicted RBP16.08■□□□□ 0.16
VPS28-213ENST00000530983 WDR82Q6UXN9 313 aa16.08■□□□□ 0.16
VPS28-213ENST00000530983 Q6ZT83 130 aa16.08■□□□□ 0.16
VPS28-213ENST00000530983 H2BFWTQ7Z2G1 175 aa16.08■□□□□ 0.16
VPS28-213ENST00000530983 SRD5A3Q9H8P0 318 aa16.08■□□□□ 0.16
VPS28-213ENST00000530983 IGHV3-43A0A0B4J1X8 118 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 AGFG2O95081 481 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 IGHV3-43DP0DP04 118 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 DEFA4P12838 97 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 COX5AP20674 150 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 NECAP1Q8NC96 275 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 OR13A1Q8NGR1 328 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 PRR7Q8TB68 274 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 RAB24Q969Q5 203 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 CIB3Q96Q77 187 aaPredicted RBP16.07■□□□□ 0.16
VPS28-213ENST00000530983 MANBALQ9NQG1 85 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.07■□□□□ 0.16
VPS28-213ENST00000530983 TCAPO15273 167 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 BTF3P20290 206 aaKnown RBP16.07■□□□□ 0.16
VPS28-213ENST00000530983 FAM214BQ7L5A3 538 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 TMEM178AQ8NBL3 297 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 OR51G1Q8NGK1 321 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 OR4F5Q8NH21 305 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 OR4F4Q96R69 305 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 NDUFAF3Q9BU61 184 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 ACTR3CQ9C0K3 210 aaPredicted RBP16.07■□□□□ 0.16
VPS28-213ENST00000530983 CXXC4Q9H2H0 198 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 NBEAQ8NFP9 2946 aa16.07■□□□□ 0.16
VPS28-213ENST00000530983 DSPP15924 2871 aaKnown RBP16.07■□□□□ 0.16
VPS28-213ENST00000530983 IGKV3-15P01624 115 aa16.06■□□□□ 0.16
VPS28-213ENST00000530983 COL10A1Q03692 680 aa16.06■□□□□ 0.16
VPS28-213ENST00000530983 TCTEX1D1Q8N7M0 179 aa16.06■□□□□ 0.16
VPS28-213ENST00000530983 NOL4LQ96MY1 436 aaPredicted RBP16.06■□□□□ 0.16
VPS28-213ENST00000530983 M0R296 226 aa16.06■□□□□ 0.16
VPS28-213ENST00000530983 RBMXL2O75526 392 aaKnown RBP16.06■□□□□ 0.16
VPS28-213ENST00000530983 GZMHP20718 246 aa16.06■□□□□ 0.16
VPS28-213ENST00000530983 RTP5Q14D33 572 aa16.06■□□□□ 0.16
VPS28-213ENST00000530983 HES3Q5TGS1 186 aa16.06■□□□□ 0.16
VPS28-213ENST00000530983 OR1P1Q8NH06 330 aa16.06■□□□□ 0.16
VPS28-213ENST00000530983 RFESDQ8TAC1 157 aa16.06■□□□□ 0.16
VPS28-213ENST00000530983 TAAR6Q96RI8 345 aa16.06■□□□□ 0.16
VPS28-213ENST00000530983 MARCH11A6NNE9 402 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 DEFB108AA8MXU0 73 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 GUSBP1Q15486 140 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 ZNF66Q6ZN08 573 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 Q8N7P7 452 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 TRIB1Q96RU8 372 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 FZR1Q9UM11 496 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 WASF3Q9UPY6 502 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 PSG11Q9UQ72 335 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 GAB2Q9UQC2 676 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 LAMP3Q9UQV4 416 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 H7BYZ3 331 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 PAGE4O60829 102 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 WISP2O76076 250 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 TNFSF10P50591 281 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 GNB2P62879 340 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 WDR31Q8NA23 367 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 ELOVL1Q9BW60 279 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 MSL2Q9HCI7 577 aa16.05■□□□□ 0.16
VPS28-213ENST00000530983 ZNF891A8MT65 544 aaPredicted RBP16.04■□□□□ 0.16
VPS28-213ENST00000530983 GALR1P47211 349 aa16.04■□□□□ 0.16
VPS28-213ENST00000530983 ZNF709Q8N972 641 aa16.04■□□□□ 0.16
VPS28-213ENST00000530983 CNEP1R1Q8N9A8 125 aa16.04■□□□□ 0.16
VPS28-213ENST00000530983 HSD17B10Q99714 261 aaKnown RBP16.04■□□□□ 0.16
VPS28-213ENST00000530983 DCTN5Q9BTE1 182 aa16.04■□□□□ 0.16
VPS28-213ENST00000530983 HCFC1P51610 2035 aa16.04■□□□□ 0.16
VPS28-213ENST00000530983 C15orf62A8K5M9 175 aa16.03■□□□□ 0.16
VPS28-213ENST00000530983 TIMM8AO60220 97 aaPredicted RBP16.03■□□□□ 0.16
VPS28-213ENST00000530983 RAB4BP61018 213 aa16.03■□□□□ 0.16
VPS28-213ENST00000530983 NUTF2P61970 127 aaKnown RBP16.03■□□□□ 0.16
VPS28-213ENST00000530983 FOXF2Q12947 444 aa16.03■□□□□ 0.16
VPS28-213ENST00000530983 COA6Q5JTJ3 125 aaKnown RBP16.03■□□□□ 0.16
VPS28-213ENST00000530983 TGIF2LYQ8IUE0 185 aa16.03■□□□□ 0.16
VPS28-213ENST00000530983 BEND2Q8NDZ0 799 aa16.03■□□□□ 0.16
VPS28-213ENST00000530983 QTRT1Q9BXR0 403 aaKnown RBP16.03■□□□□ 0.16
VPS28-213ENST00000530983 ZNF705GA8MUZ8 300 aaPredicted RBP16.03■□□□□ 0.16
VPS28-213ENST00000530983 C15orf65H3BRN8 121 aa16.03■□□□□ 0.16
VPS28-213ENST00000530983 IFNL4K9M1U5 179 aa16.03■□□□□ 0.16
VPS28-213ENST00000530983 EREGO14944 169 aa16.03■□□□□ 0.16
VPS28-213ENST00000530983 TUBG1P23258 451 aa16.03■□□□□ 0.16
VPS28-213ENST00000530983 OR9G9P0C7N8 305 aa16.02■□□□□ 0.16
VPS28-213ENST00000530983 NPPCP23582 126 aa16.02■□□□□ 0.16
VPS28-213ENST00000530983 FABP6P51161 128 aa16.02■□□□□ 0.16
VPS28-213ENST00000530983 SOX8P57073 446 aa16.02■□□□□ 0.16
VPS28-213ENST00000530983 P2RY6Q15077 328 aa16.02■□□□□ 0.16
VPS28-213ENST00000530983 SMIM21Q3B7S5 101 aa16.02■□□□□ 0.16
VPS28-213ENST00000530983 VWA1Q6PCB0 445 aa16.02■□□□□ 0.16
VPS28-213ENST00000530983 NEIL1Q96FI4 390 aaPredicted RBP16.02■□□□□ 0.16
VPS28-213ENST00000530983 OR5B12Q96R08 314 aa16.02■□□□□ 0.16
VPS28-213ENST00000530983 XKRY2A2RUG3 117 aa16.02■□□□□ 0.15
VPS28-213ENST00000530983 C17orf112F2Z3M2 114 aa16.02■□□□□ 0.15
VPS28-213ENST00000530983 PROP1O75360 226 aa16.02■□□□□ 0.15
VPS28-213ENST00000530983 IGHG3P01860 377 aa16.02■□□□□ 0.15
VPS28-213ENST00000530983 GYPAP02724 150 aa16.02■□□□□ 0.15
VPS28-213ENST00000530983 KITLGP21583 273 aa16.02■□□□□ 0.15
VPS28-213ENST00000530983 KIR2DL2P43627 348 aaPredicted RBP16.02■□□□□ 0.15
VPS28-213ENST00000530983 CDC34P49427 236 aaPredicted RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms