RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 SH3BGRL3Q9H299 93 aa12.18□□□□□ -0.46
ECHDC1-220ENST00000528402 TIMM9Q9Y5J7 89 aa12.18□□□□□ -0.46
ECHDC1-220ENST00000528402 MGAQ8IWI9 3026 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 F8W036 122 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 ATXN7O15265 892 aaPredicted RBP12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 GPR37O15354 613 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 PPIHO43447 177 aaKnown RBP12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 RBMXL2O75526 392 aaKnown RBP12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 HRASP01112 189 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 METTL15P1P0C7V9 234 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 C1QTNF9P0C862 333 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 NFYBP25208 207 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 GNB2P62879 340 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 TMEM267Q0VDI3 215 aaPredicted RBP12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 POU2AF1Q16633 256 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 FAM71F2Q6NXP2 309 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 ZNF429Q86V71 674 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 MUC15Q8N387 334 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 OR10P1Q8NGE3 313 aa12.17□□□□□ -0.46
ECHDC1-220ENST00000528402 TRBV23-1A0A0A0MS06 115 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 CEBPZOSA8MTT3 80 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 H3BP45 60 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 DLL1O00548 723 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 SOX15O60248 233 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 DEFA5Q01523 94 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 SLC38A11Q08AI6 406 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 RPL39P5Q59GN2 51 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 PRAMEF5Q5TYX0 476 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 DUX4L9Q6RFH8 374 aaPredicted RBP12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 LYG1Q8N1E2 194 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 ZCCHC24Q8N2G6 241 aaKnown RBP12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 LINC00311Q8N616 119 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 FAM213BQ8TBF2 198 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 ZNF251Q9BRH9 671 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 DCAF16Q9NXF7 216 aa12.16□□□□□ -0.46
ECHDC1-220ENST00000528402 SAA2-SAA4A0A096LPE2 208 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 TRAV1-1A0A0B4J248 108 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 SLC31A2O15432 143 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 SNAPINO95295 136 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 H2AFB1P0C5Y9 115 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 SAA2P0DJI9 122 aaPredicted RBP12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 RTL8BQ17RB0 113 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 TMEM200BQ69YZ2 307 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 CENPVQ7Z7K6 275 aaPredicted RBP12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 THNSL2Q86YJ6 484 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 TGIF2LYQ8IUE0 185 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 ZNF596Q8TC21 504 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 RBMXL1Q96E39 390 aaKnown RBP12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 TMEM147Q9BVK8 224 aa12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 WDR61Q9GZS3 305 aaKnown RBP12.15□□□□□ -0.46
ECHDC1-220ENST00000528402 A0A1W2PPH5 198 aa12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 MEX3AA1L020 520 aaKnown RBP12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 IFNA17P01571 189 aa12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 ATP5IP56385 69 aaPredicted RBP12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 GUK1Q16774 197 aa12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 NEUROG1Q92886 237 aa12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 GGACTQ9BVM4 153 aa12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 NKX6-2Q9C056 277 aaPredicted RBP12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 RAB1BQ9H0U4 201 aa12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 KPTNQ9Y664 436 aa12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 HCFC1P51610 2035 aa12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 TLN1Q9Y490 2541 aaKnown RBP12.14□□□□□ -0.47
ECHDC1-220ENST00000528402 CEP295Q9C0D2 2601 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 DVL1O14640 695 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 SCO1O75880 301 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 MBP02144 154 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 OR9G9P0C7N8 305 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 AGAP20933 346 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 RELBQ01201 579 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 ARL16Q0P5N6 197 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 ZNF833PQ6ZTB9 187 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 TMEM186Q96B77 213 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 OR4C12Q96R67 309 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 FKBP11Q9NYL4 201 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 KIAA1456Q9P272 454 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 ARFGEF3Q5TH69 2177 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 PIEZO2Q9H5I5 2752 aa12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 DIDO1Q9BTC0 2240 aaKnown RBP12.13□□□□□ -0.47
ECHDC1-220ENST00000528402 A0A087X0M5 115 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 A0A1B0GX30 115 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 PMS2P5A8MQ11 134 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 SRSF3P84103 164 aaKnown RBP12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 AKR1C1Q04828 323 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 BTN1A1Q13410 526 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 ZNF273Q14593 569 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 VWC2Q2TAL6 325 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 HAPLN4Q86UW8 402 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 ZNF383Q8NA42 475 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 H1FXQ92522 213 aaKnown RBP12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 TAF15Q92804 592 aaKnown RBP eCLIP12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 TNFRSF14Q92956 283 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 QTRT1Q9BXR0 403 aaKnown RBP12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 UNKLQ9H9P5 680 aaKnown RBP12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 TMEM140Q9NV12 185 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 PRNDQ9UKY0 176 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 FOXA2Q9Y261 457 aaPredicted RBP12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 ZNF257Q9Y2Q1 563 aa12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 YLPM1P49750 1951 aaKnown RBP12.12□□□□□ -0.47
ECHDC1-220ENST00000528402 AGPAT2O15120 278 aa12.11□□□□□ -0.47
ECHDC1-220ENST00000528402 MMP23AO75900 390 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms