RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ACY3Q96HD9 319 aa3.52□□□□□ -1.85
CD44-220ENST00000525688 FOPNLQ96NB1 174 aa3.52□□□□□ -1.85
CD44-220ENST00000525688 MAP1LC3BQ9GZQ8 125 aa3.52□□□□□ -1.85
CD44-220ENST00000525688 BPTFQ12830 3046 aa3.52□□□□□ -1.85
CD44-220ENST00000525688 PKD1L2Q7Z442 2459 aa3.52□□□□□ -1.85
CD44-220ENST00000525688 SDK1Q7Z5N4 2213 aa3.52□□□□□ -1.85
CD44-220ENST00000525688 EML5Q05BV3 1969 aa3.52□□□□□ -1.85
CD44-220ENST00000525688 TMEM131Q92545 1883 aa3.52□□□□□ -1.85
CD44-220ENST00000525688 FREM2Q5SZK8 3169 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 SPAG17Q6Q759 2223 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 PLXND1Q9Y4D7 1925 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 IGHV3OR16-13A0A075B7E8 117 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 TRAV8-6A0A0B4J262 113 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 IGHV1OR15-9A0A0B4J2B8 117 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 A0A0D9SEW6 157 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 CXorf51AA0A1B0GTR3 108 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 A0A1W2PRE2 83 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 C10orf142B7Z368 130 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 C8orf87E5RJ46 101 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 AGPAT2O15120 278 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 CCDC22O60826 627 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 PDCD6O75340 191 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 SPAG7O75391 227 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 SERPINB7O75635 380 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 EPPINO95925 133 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 ERGP11308 486 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 HLA-EP13747 358 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 IGLL1P15814 213 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 RAB13P51153 203 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 DNAJB13P59910 316 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 TPI1P60174 286 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 CKS1BP61024 79 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 RPS23P62266 143 aaKnown RBP3.51□□□□□ -1.85
CD44-220ENST00000525688 GNA12Q03113 381 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 PMAIP1Q13794 54 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 SLC10A1Q14973 349 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 IAH1Q2TAA2 248 aaPredicted RBP3.51□□□□□ -1.85
CD44-220ENST00000525688 PLPPR5Q32ZL2 321 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 C9orf64Q5T6V5 341 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 HENMT1Q5T8I9 393 aaKnown RBP3.51□□□□□ -1.85
CD44-220ENST00000525688 SPATA31B1PQ5VZV4 182 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 NANOGP8Q6NSW7 305 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 LPCAT3Q6P1A2 487 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 ZNF620Q6ZNG0 422 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 DNM1P46Q6ZS02 220 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 ZNF550Q7Z398 422 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 ABCA7Q8IZY2 2146 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 UMODL1-AS1Q8N2C9 162 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 OSR2Q8N2R0 312 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 DCAF4L2Q8NA75 395 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 OR4K15Q8NH41 348 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 LRRC29Q8WV35 223 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 AURKBQ96GD4 344 aaPredicted RBP3.51□□□□□ -1.85
CD44-220ENST00000525688 BMFQ96LC9 184 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 PEBP4Q96S96 227 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 GPER1Q99527 375 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 RSPO3Q9BXY4 272 aaPredicted RBP3.51□□□□□ -1.85
CD44-220ENST00000525688 EBPLQ9BY08 206 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 OR51I2Q9H344 312 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 ZDHHC11Q9H8X9 412 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 NANOGQ9H9S0 305 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 MRPL27Q9P0M9 148 aaKnown RBP3.51□□□□□ -1.85
CD44-220ENST00000525688 HS3ST2Q9Y278 367 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 PKIGQ9Y2B9 76 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 YTHDF2Q9Y5A9 579 aaKnown RBP3.51□□□□□ -1.85
CD44-220ENST00000525688 ZNF780BQ9Y6R6 833 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 GON4LQ3T8J9 2241 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 FRYQ5TBA9 3013 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 DOCK4Q8N1I0 1966 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 CHD5Q8TDI0 1954 aa3.51□□□□□ -1.85
CD44-220ENST00000525688 OR5H1A6NKK0 313 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 FAM183AA6NL82 134 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 C5orf58C9J3I9 102 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 HMGB3O15347 200 aaKnown RBP3.5□□□□□ -1.85
CD44-220ENST00000525688 NDUFS5O43920 106 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 ARL6IP5O75915 188 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 PROSCO94903 275 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 IFNGP01579 166 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 C1QBP02746 253 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 C1QCP02747 245 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 ATP5G1P05496 136 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 CD1EP15812 388 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 KLK2P20151 261 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 VDAC1P21796 283 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 IGHV1-2P23083 117 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 PRSS3P35030 304 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 BTCP35070 178 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 DRD3P35462 400 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 VDAC2P45880 294 aaPredicted RBP3.5□□□□□ -1.85
CD44-220ENST00000525688 PSMD8P48556 350 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 SELENOTP62341 195 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 TBPL1P62380 186 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 RPS21P63220 83 aaKnown RBP3.5□□□□□ -1.85
CD44-220ENST00000525688 CDK5Q00535 292 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 C1DQ13901 141 aaKnown RBP3.5□□□□□ -1.85
CD44-220ENST00000525688 H2AFVQ71UI9 128 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 OOSP2Q86WS3 158 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 TGIF2LYQ8IUE0 185 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 OR4M1Q8NGD0 313 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 OR9Q1Q8NGQ5 310 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms