RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 RFNGQ9Y644 331 aa3.69□□□□□ -1.82
USP47-204ENST00000525078 KIF26BQ2KJY2 2108 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 LRP4O75096 1905 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 CCNB3Q8WWL7 1395 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 IZUMO1RA6ND01 250 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 TMX2-CTNND1H3BSU7 103 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 COX7A2LO14548 114 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 NRASP01111 189 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 HRASP01112 189 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 KRASP01116 189 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 C1QBP02746 253 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 C8GP07360 202 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 ZNF823P16415 610 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 DEFA3P59666 94 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 HOXC5Q00444 222 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 BSPH1Q075Z2 132 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 UBE2SQ16763 222 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 CCDC153Q494R4 210 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 IBA57Q5T440 356 aaKnown RBP3.68□□□□□ -1.82
USP47-204ENST00000525078 KRTAP7-1Q8IUC3 87 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 AMN1Q8IY45 258 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 MKXQ8IYA7 352 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 Q8N7P7 452 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 CMBLQ96DG6 245 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 RMI2Q96E14 147 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 TCEAL4Q96EI5 215 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 ZNF799Q96GE5 643 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 ZNF286AQ9HBT8 521 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 TMEM138Q9NPI0 162 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 SPANXA1Q9NS26 97 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 SLC23A2Q9UGH3 650 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 MRPS16Q9Y3D3 137 aaKnown RBP3.68□□□□□ -1.82
USP47-204ENST00000525078 TMEM56-RWDD3S4R434 201 aa3.68□□□□□ -1.82
USP47-204ENST00000525078 ITGB4P16144 1822 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 WDR97A6NE52 1622 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 IGSF23A1L1A6 192 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 PRORSD1PA6NEY8 169 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 LEUTXA8MZ59 168 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 AIPO00170 330 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 MED6O75586 246 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 OR10J4P0C629 311 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 ELK1P19419 428 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 TNFAIP6P98066 277 aaPredicted RBP3.67□□□□□ -1.82
USP47-204ENST00000525078 TMEM78Q5T7P6 136 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 GLT8D1Q68CQ7 371 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 CYB5R2Q6BCY4 276 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 WDR86Q86TI4 376 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 SGPP2Q8IWX5 399 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 C11orf40Q8WZ69 217 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 RBPMSQ93062 196 aaKnown RBP3.67□□□□□ -1.82
USP47-204ENST00000525078 PYGO2Q9BRQ0 406 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 RSPO3Q9BXY4 272 aaPredicted RBP3.67□□□□□ -1.82
USP47-204ENST00000525078 TMEM222Q9H0R3 208 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 PARVBQ9HBI1 364 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 TAAR3PQ9P1P4 343 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 TBX21Q9UL17 535 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 BAZ2AQ9UIF9 1905 aaKnown RBP3.67□□□□□ -1.82
USP47-204ENST00000525078 KIF21AQ7Z4S6 1674 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 THSD7AQ9UPZ6 1657 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 HECW2Q9P2P5 1572 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 RAPGEF2Q9Y4G8 1499 aa3.67□□□□□ -1.82
USP47-204ENST00000525078 HECW1Q76N89 1606 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 IGHV3-43A0A0B4J1X8 118 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 IGKV1-12A0A0C4DH73 117 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 A0A1W2PQ67 120 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 E7EQ34 232 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 M0QZK8 103 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 LST1O00453 97 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 RBFOX2O43251 390 aaKnown RBP eCLIP3.66□□□□□ -1.82
USP47-204ENST00000525078 IGKV1D-12P01611 117 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 PPBPP02775 128 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 ADRA2AP08913 450 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 RBP1P09455 135 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 CD7P09564 240 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 OR5AC1P0C628 307 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 SMIM17P0DL12 118 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 PPIBP23284 216 aaKnown RBP3.66□□□□□ -1.82
USP47-204ENST00000525078 OPRM1P35372 400 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 RBX1P62877 108 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 CST6Q15828 149 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 SP6Q3SY56 376 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 CCDC58Q4VC31 144 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 Q6ZS49 121 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 OSR2Q8N2R0 312 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 ST6GALNAC3Q8NDV1 305 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 GPR119Q8TDV5 335 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 RTN4IP1Q8WWV3 396 aaPredicted RBP3.66□□□□□ -1.82
USP47-204ENST00000525078 FRZBQ92765 325 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 TSC22D3Q99576 134 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 PLA2G2FQ9BZM2 168 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 GABARAPL1Q9H0R8 117 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 LHX9Q9NQ69 397 aa3.66□□□□□ -1.82
USP47-204ENST00000525078 THOC2Q8NI27 1593 aaKnown RBP3.66□□□□□ -1.82
USP47-204ENST00000525078 GCC2Q8IWJ2 1684 aa3.65□□□□□ -1.82
USP47-204ENST00000525078 ROBO3Q96MS0 1386 aa3.65□□□□□ -1.82
USP47-204ENST00000525078 SETD5Q9C0A6 1442 aa3.65□□□□□ -1.83
USP47-204ENST00000525078 TRBV20OR9-2A0A075B6H5 130 aa3.65□□□□□ -1.83
USP47-204ENST00000525078 IGHV3OR15-7A0A075B7D8 119 aa3.65□□□□□ -1.83
USP47-204ENST00000525078 IGHV3-21A0A0B4J1V1 117 aa3.65□□□□□ -1.83
USP47-204ENST00000525078 A0A0J9YY10 115 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms