RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 DUTP33316 252 aaKnown RBP16.14■□□□□ 0.17
USP53-208ENST00000514305 IDO2Q6ZQW0 420 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 KCTD9Q7L273 389 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 TCTEX1D1Q8N7M0 179 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 CCDC71LQ8N9Z2 235 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 OR5AN1Q8NGI8 311 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 OR51S1Q8NGJ8 323 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 CD300LFQ8TDQ1 290 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 CFHR4Q92496 578 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 SLC25A21Q9BQT8 299 aaPredicted RBP16.14■□□□□ 0.17
USP53-208ENST00000514305 AIFM2Q9BRQ8 373 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 RSRP1Q9BUV0 290 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 SLC35D1Q9NTN3 355 aa16.14■□□□□ 0.17
USP53-208ENST00000514305 GPR137BO60478 399 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 IGKV1D-33P01593 117 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 IGKV1-33P01594 117 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 ZNF735P0CB33 412 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 PAX6P26367 422 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 GNRHRP30968 328 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 EBI3Q14213 229 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 AADACL3Q5VUY0 350 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 DHRS7BQ6IAN0 325 aaPredicted RBP16.13■□□□□ 0.17
USP53-208ENST00000514305 TCTEX1D2Q8WW35 142 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 FXYD6Q9H0Q3 95 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 RNF114Q9Y508 228 aa16.13■□□□□ 0.17
USP53-208ENST00000514305 IGHV3-72A0A0B4J1Y9 119 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 H0YJW9 148 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 M0QZ24 198 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 SRSF4Q08170 494 aaKnown RBP16.12■□□□□ 0.17
USP53-208ENST00000514305 LY6EQ16553 131 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 FAAP20Q6NZ36 180 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 MZT2BQ6NZ67 158 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 ZNF818PQ6ZRF7 136 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 DRAXINQ8NBI3 349 aaPredicted RBP16.12■□□□□ 0.17
USP53-208ENST00000514305 OR4C13Q8NGP0 309 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 PIFOQ8TCI5 191 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 FLYWCH2Q96CP2 140 aaKnown RBP16.12■□□□□ 0.17
USP53-208ENST00000514305 RBM14Q96PK6 669 aaKnown RBP16.12■□□□□ 0.17
USP53-208ENST00000514305 CITED1Q99966 193 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 COPZ2Q9P299 210 aa16.12■□□□□ 0.17
USP53-208ENST00000514305 A6NDX4 124 aa16.11■□□□□ 0.17
USP53-208ENST00000514305 PROP1O75360 226 aa16.11■□□□□ 0.17
USP53-208ENST00000514305 UPK1BO75841 260 aa16.11■□□□□ 0.17
USP53-208ENST00000514305 OR2F2O95006 317 aa16.11■□□□□ 0.17
USP53-208ENST00000514305 CTSDP07339 412 aaPredicted RBP16.11■□□□□ 0.17
USP53-208ENST00000514305 DEFA1P59665 94 aa16.11■□□□□ 0.17
USP53-208ENST00000514305 DEFA3P59666 94 aa16.11■□□□□ 0.17
USP53-208ENST00000514305 DEFA6Q01524 100 aa16.11■□□□□ 0.17
USP53-208ENST00000514305 EAF1Q96JC9 268 aaPredicted RBP16.11■□□□□ 0.17
USP53-208ENST00000514305 TSNAXQ99598 290 aaKnown RBP16.11■□□□□ 0.17
USP53-208ENST00000514305 LIN7CQ9NUP9 197 aaKnown RBP16.11■□□□□ 0.17
USP53-208ENST00000514305 KIAA1456Q9P272 454 aa16.11■□□□□ 0.17
USP53-208ENST00000514305 LINC00854A0A1B0GVQ3 168 aa16.1■□□□□ 0.17
USP53-208ENST00000514305 B3GALNT1O75752 331 aa16.1■□□□□ 0.17
USP53-208ENST00000514305 LGALS7P47929 136 aa16.1■□□□□ 0.17
USP53-208ENST00000514305 RND3P61587 244 aa16.1■□□□□ 0.17
USP53-208ENST00000514305 RPS16P62249 146 aaKnown RBP16.1■□□□□ 0.17
USP53-208ENST00000514305 RBMS2Q15434 407 aaKnown RBP16.1■□□□□ 0.17
USP53-208ENST00000514305 ZNF383Q8NA42 475 aa16.1■□□□□ 0.17
USP53-208ENST00000514305 OR4S2Q8NH73 311 aa16.1■□□□□ 0.17
USP53-208ENST00000514305 MARCH1Q8TCQ1 289 aa16.1■□□□□ 0.17
USP53-208ENST00000514305 SLC25A33Q9BSK2 321 aa16.1■□□□□ 0.17
USP53-208ENST00000514305 NPFFR1Q9GZQ6 430 aa16.1■□□□□ 0.17
USP53-208ENST00000514305 MOB4Q9Y3A3 225 aa16.1■□□□□ 0.17
USP53-208ENST00000514305 LYRM1O43325 122 aa16.09■□□□□ 0.17
USP53-208ENST00000514305 TNFSF12O43508 249 aa16.09■□□□□ 0.17
USP53-208ENST00000514305 PGLYRP1O75594 196 aaPredicted RBP16.09■□□□□ 0.17
USP53-208ENST00000514305 IGLV2-14P01704 120 aa16.09■□□□□ 0.17
USP53-208ENST00000514305 CD24P25063 80 aa16.09■□□□□ 0.17
USP53-208ENST00000514305 HNF4GQ14541 408 aa16.09■□□□□ 0.17
USP53-208ENST00000514305 PHLDA2Q53GA4 152 aa16.09■□□□□ 0.17
USP53-208ENST00000514305 GLDNQ6ZMI3 551 aaPredicted RBP16.09■□□□□ 0.17
USP53-208ENST00000514305 OR13C8Q8NGS7 320 aa16.09■□□□□ 0.17
USP53-208ENST00000514305 LINC01006Q8NI28 216 aa16.09■□□□□ 0.17
USP53-208ENST00000514305 OSR1Q8TAX0 266 aaPredicted RBP16.09■□□□□ 0.17
USP53-208ENST00000514305 FAM212BQ9NTI7 297 aaPredicted RBP16.09■□□□□ 0.17
USP53-208ENST00000514305 KCNIP3Q9Y2W7 256 aa16.09■□□□□ 0.17
USP53-208ENST00000514305 PIGBOS1A0A0B4J2F0 54 aa16.08■□□□□ 0.16
USP53-208ENST00000514305 NCBP2LA6PVI3 153 aaKnown RBP16.08■□□□□ 0.16
USP53-208ENST00000514305 RBFOX2O43251 390 aaKnown RBP eCLIP16.08■□□□□ 0.16
USP53-208ENST00000514305 FGF16O43320 207 aa16.08■□□□□ 0.16
USP53-208ENST00000514305 FCGR3BO75015 233 aa16.08■□□□□ 0.16
USP53-208ENST00000514305 PIGPP57054 158 aa16.08■□□□□ 0.16
USP53-208ENST00000514305 SLC2A9Q9NRM0 540 aa16.08■□□□□ 0.16
USP53-208ENST00000514305 GPR132Q9UNW8 380 aa16.08■□□□□ 0.16
USP53-208ENST00000514305 LINC00473A8K010 186 aa16.07■□□□□ 0.16
USP53-208ENST00000514305 SHOXO15266 292 aa16.07■□□□□ 0.16
USP53-208ENST00000514305 SPDEFO95238 335 aa16.07■□□□□ 0.16
USP53-208ENST00000514305 HRASP01112 189 aa16.07■□□□□ 0.16
USP53-208ENST00000514305 EIF4EBP1Q13541 118 aaPredicted RBP16.07■□□□□ 0.16
USP53-208ENST00000514305 MMDQ15546 238 aa16.07■□□□□ 0.16
USP53-208ENST00000514305 PDLIM3Q53GG5 364 aaPredicted RBP16.07■□□□□ 0.16
USP53-208ENST00000514305 SPAG16Q8N0X2 631 aa16.07■□□□□ 0.16
USP53-208ENST00000514305 OR51H1Q8NH63 302 aa16.07■□□□□ 0.16
USP53-208ENST00000514305 DDB2Q92466 427 aa16.07■□□□□ 0.16
USP53-208ENST00000514305 C5orf30Q96GV9 206 aa16.07■□□□□ 0.16
USP53-208ENST00000514305 RASL11BQ9BPW5 248 aa16.07■□□□□ 0.16
USP53-208ENST00000514305 RANBP3Q9H6Z4 567 aaPredicted RBP16.07■□□□□ 0.16
USP53-208ENST00000514305 TEX13DA0A0J9YY54 714 aaPredicted RBP16.06■□□□□ 0.16
USP53-208ENST00000514305 MPPED1O15442 326 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms