RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	ZNF695	Q8IW36	515 aa		10.93	□□□□□ -0.66
APTX-231	ENST00000494973	LRTM2	Q8N967	370 aa		10.93	□□□□□ -0.66
APTX-231	ENST00000494973	ZNF383	Q8NA42	475 aa		10.93	□□□□□ -0.66
APTX-231	ENST00000494973	OR8H1	Q8NGG4	311 aa		10.93	□□□□□ -0.66
APTX-231	ENST00000494973	OR2T10	Q8NGZ9	312 aa		10.93	□□□□□ -0.66
APTX-231	ENST00000494973	OR5R1	Q8NH85	324 aa		10.93	□□□□□ -0.66
APTX-231	ENST00000494973	ZDHHC16	Q969W1	377 aa		10.93	□□□□□ -0.66
APTX-231	ENST00000494973	FLYWCH2	Q96CP2	140 aa	Known RBP	10.93	□□□□□ -0.66
APTX-231	ENST00000494973	TEX15	Q9BXT5	2789 aa		10.93	□□□□□ -0.66
APTX-231	ENST00000494973	VPS13C	Q709C8	3753 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	C7orf66	A4D0T2	115 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	MOS	P00540	346 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	NQO2	P16083	231 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	SPN	P16150	400 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	SRD5A1	P18405	259 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	RPL30	P62888	115 aa	Known RBP	10.92	□□□□□ -0.66
APTX-231	ENST00000494973	SUPT4H1	P63272	117 aa	Known RBP	10.92	□□□□□ -0.66
APTX-231	ENST00000494973	TMEM177	Q53S58	311 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	FAM219A	Q8IW50	185 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	DRAXIN	Q8NBI3	349 aa	Predicted RBP	10.92	□□□□□ -0.66
APTX-231	ENST00000494973	VSTM2A	Q8TAG5	236 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	MITD1	Q8WV92	249 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	CFHR4	Q92496	578 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	RBPMS	Q93062	196 aa	Known RBP	10.92	□□□□□ -0.66
APTX-231	ENST00000494973	TP53RK	Q96S44	253 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	TSNAX	Q99598	290 aa	Known RBP	10.92	□□□□□ -0.66
APTX-231	ENST00000494973	C1RL	Q9NZP8	487 aa		10.92	□□□□□ -0.66
APTX-231	ENST00000494973	ZAN	Q9Y493	2812 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	VENTX	O95231	258 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	CDS2	O95674	445 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	CRYZL1	O95825	349 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	VSIG10L2	P0DP72	767 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	EBI3	Q14213	229 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	DIAPH2-AS1	Q14236	149 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	TMEM187	Q14656	261 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	SLC9A3R2	Q15599	337 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	LDLRAD2	Q5SZI1	272 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	C16orf82	Q7Z2V1	217 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	CADM3	Q8N126	398 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	TMEM86B	Q8N661	226 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	RNASE11	Q8TAA1	199 aa	Known RBP	10.91	□□□□□ -0.66
APTX-231	ENST00000494973	CASTOR1	Q8WTX7	329 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	SSMEM1	Q8WWF3	244 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	CAPSL	Q8WWF8	208 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	AJUBA	Q96IF1	538 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	HARBI1	Q96MB7	349 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	TMEM56	Q96MV1	263 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	PRDM13	Q9H4Q3	707 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	BEX1	Q9HBH7	125 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	CACFD1	Q9UGQ2	172 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	TMEM56-RWDD3	S4R434	201 aa		10.91	□□□□□ -0.66
APTX-231	ENST00000494973	FAM90A9P	A6NNJ1	464 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	SHOX	O15266	292 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	IFNA21	P01568	189 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	IGKV1D-33	P01593	117 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	IGKV1-33	P01594	117 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	LPAR6	P43657	344 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	AKR1C2	P52895	323 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	HES1	Q14469	280 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	POU2AF1	Q16633	256 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	VMA21	Q3ZAQ7	101 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	OR2B11	Q5JQS5	317 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	TMEM268	Q5VZI3	342 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	C12orf45	Q8N5I9	185 aa	Predicted RBP	10.9	□□□□□ -0.66
APTX-231	ENST00000494973	GLYATL2	Q8WU03	294 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	RRNAD1	Q96FB5	475 aa	Known RBP	10.9	□□□□□ -0.66
APTX-231	ENST00000494973	SPIN2A	Q99865	258 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	SSX3	Q99909	188 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	SPIN2B	Q9BPZ2	258 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	RAB18	Q9NP72	206 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	KIAA1456	Q9P272	454 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	TMED3	Q9Y3Q3	217 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	POMT1	Q9Y6A1	747 aa		10.9	□□□□□ -0.66
APTX-231	ENST00000494973	MARCH11	A6NNE9	402 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973		M0QZK8	103 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	SSNA1	O43805	119 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	SNRNP70	P08621	437 aa	Known RBP	10.89	□□□□□ -0.67
APTX-231	ENST00000494973	FGF2	P09038	288 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	TMEM11	P17152	192 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	VDAC1	P21796	283 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	RPS16	P62249	146 aa	Known RBP	10.89	□□□□□ -0.67
APTX-231	ENST00000494973	DEFB112	Q30KQ8	113 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	SP6	Q3SY56	376 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	LIN54	Q6MZP7	749 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973		Q6YL49	198 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973		Q6ZNX1	250 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	OR4A5	Q8NH83	315 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	LSM10	Q969L4	123 aa	Known RBP	10.89	□□□□□ -0.67
APTX-231	ENST00000494973	JMJD8	Q96S16	334 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	GPHA2	Q96T91	129 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	SMR3A	Q99954	134 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	SEC22C	Q9BRL7	303 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	OR51J1	Q9H342	316 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	ALG5	Q9Y673	324 aa		10.89	□□□□□ -0.67
APTX-231	ENST00000494973	IGHV3-72	A0A0B4J1Y9	119 aa		10.88	□□□□□ -0.67
APTX-231	ENST00000494973	RAMP3	O60896	148 aa		10.88	□□□□□ -0.67
APTX-231	ENST00000494973	S1PR2	O95136	353 aa		10.88	□□□□□ -0.67
APTX-231	ENST00000494973	IGKV1-16	P04430	117 aa		10.88	□□□□□ -0.67
APTX-231	ENST00000494973	ZNF585B	Q52M93	769 aa		10.88	□□□□□ -0.67
APTX-231	ENST00000494973	THOC7	Q6I9Y2	204 aa	Known RBP	10.88	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms