RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 BCL9O00512 1426 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 TTC21AQ8NDW8 1320 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 CLDN24A6NM45 220 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 A8MU10 97 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 KPNA3O00505 521 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-212ENST00000493341 STK16O75716 305 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 GYPCP04921 128 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 DNAH10OSP0CZ25 163 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 CGB3P0DN86 165 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 CGB7P0DN87 165 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 PTHLHP12272 177 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 ALOX5APP20292 161 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 PPP1CCP36873 323 aaKnown RBP2.88□□□□□ -1.95
VPS13A-212ENST00000493341 EMX1Q04741 257 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-212ENST00000493341 PRDX4Q13162 271 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 ENDOGQ14249 297 aaKnown RBP2.88□□□□□ -1.95
VPS13A-212ENST00000493341 IHHQ14623 411 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 ZCWPW2Q504Y3 356 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 ZNF880Q6PDB4 577 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 NIT1Q86X76 327 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 CLDN22Q8N7P3 220 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 CMBLQ96DG6 245 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 ZNF286AQ9HBT8 521 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 PCYT1BQ9Y5K3 369 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-212ENST00000493341 QSER1Q2KHR3 1735 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 NUP188Q5SRE5 1749 aa2.88□□□□□ -1.95
VPS13A-212ENST00000493341 BLMP54132 1417 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-212ENST00000493341 EDC4Q6P2E9 1401 aaKnown RBP2.87□□□□□ -1.95
VPS13A-212ENST00000493341 FLT4P35916 1363 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 SHANK3Q9BYB0 1731 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 IGKV1-12A0A0C4DH73 117 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 A6NED7 52 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 GPR75O95800 540 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 IGKV1D-12P01611 117 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 GUSBP08236 651 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 DDTP30046 118 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 CASP8Q14790 479 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 BATFQ16520 125 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 FAM78BQ5VT40 261 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 KRTAP11-1Q8IUC1 163 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 SGPP2Q8IWX5 399 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 SLC35G5Q96KT7 338 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 C1orf50Q9BV19 199 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 OR51I2Q9H344 312 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 GLTPQ9NZD2 209 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 RAB26Q9ULW5 256 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 ARL2BPQ9Y2Y0 163 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 OVOS2A0A0J9YW53 1432 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 OVOS2Q6IE36 1432 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 COL24A1Q17RW2 1714 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 TONSLQ96HA7 1378 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 NHSQ6T4R5 1651 aa2.87□□□□□ -1.95
VPS13A-212ENST00000493341 A8MWP4 228 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 PDYNP01213 254 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 IGKV1D-33P01593 117 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 IGKV1-33P01594 117 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 OR1E2P47887 323 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 RAB5BP61020 215 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 IFITM2Q01629 132 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 PDGFRLQ15198 375 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 ADM2Q7Z4H4 148 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 STX12Q86Y82 276 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 ZNF337Q9Y3M9 751 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 PHLDA3Q9Y5J5 127 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 RGPD2P0DJD1 1756 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 SMIM9A6NGZ8 99 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 H3BSA7 217 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 EEF1E1O43324 174 aaKnown RBP2.86□□□□□ -1.95
VPS13A-212ENST00000493341 CHP2O43745 196 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 CTLA4P16410 223 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 LINC00313P59037 77 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 VBP1P61758 197 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 BSPH1Q075Z2 132 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 ACSBG2Q5FVE4 666 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 CALHM3Q86XJ0 350 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 PHOSPHO2Q8TCD6 241 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 SDHCQ99643 169 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-212ENST00000493341 DHCR7Q9UBM7 475 aaKnown RBP2.86□□□□□ -1.95
VPS13A-212ENST00000493341 OR51B4Q9Y5P0 310 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 CRB1P82279 1406 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 KMT2EQ8IZD2 1858 aa2.86□□□□□ -1.95
VPS13A-212ENST00000493341 CASZ1Q86V15 1759 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 PKD1L3Q7Z443 1732 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 IGKV2D-24A0A075B6R9 120 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 ZNF729A6NN14 1252 aaPredicted RBP2.85□□□□□ -1.95
VPS13A-212ENST00000493341 FADS1O60427 444 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 DEDDO75618 318 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 SERPINA1P01009 418 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 KRTAP10-9P60411 292 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 ARF6P62330 175 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 TAF1AQ15573 450 aaPredicted RBP2.85□□□□□ -1.95
VPS13A-212ENST00000493341 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.85□□□□□ -1.95
VPS13A-212ENST00000493341 OSR2Q8N2R0 312 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 LRRC25Q8N386 305 aaPredicted RBP2.85□□□□□ -1.95
VPS13A-212ENST00000493341 ST20-AS1Q8NBB2 130 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 OR1L8Q8NGR8 309 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 JOSD2Q8TAC2 188 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 SLC35B4Q969S0 331 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 CEP19Q96LK0 163 aa2.85□□□□□ -1.95
VPS13A-212ENST00000493341 TAS2R1Q9NYW7 299 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms