RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 FKBP1CQ5VVH2 108 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 Q6ZRU5 148 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 TMEM179BQ7Z7N9 219 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 TRPT1Q86TN4 253 aaKnown RBP3.39□□□□□ -1.87
BRCA1-220ENST00000492859 SAXO1Q8IYX7 474 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 ANKRD29Q8N6D5 301 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 NUP35Q8NFH5 326 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 OR5D14Q8NGL3 314 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 ZC2HC1AQ96GY0 325 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 ERMAPQ96PL5 475 aaPredicted RBP3.39□□□□□ -1.87
BRCA1-220ENST00000492859 VAMP8Q9BV40 100 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 MRPL32Q9BYC8 188 aaKnown RBP3.39□□□□□ -1.87
BRCA1-220ENST00000492859 DPY30Q9C005 99 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 DEPPQ9NTK1 212 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 FKBP11Q9NYL4 201 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 ZNF629Q9UEG4 869 aaPredicted RBP3.39□□□□□ -1.87
BRCA1-220ENST00000492859 WASHC3Q9Y3C0 194 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 RNF114Q9Y508 228 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 ENPP4Q9Y6X5 453 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 DNMT1P26358 1616 aaKnown RBP3.39□□□□□ -1.87
BRCA1-220ENST00000492859 CLASP1Q7Z460 1538 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 DUOX2Q9NRD8 1548 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 QRICH2Q9H0J4 1663 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 CDC42BPAQ5VT25 1732 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 IGKV1D-8A0A087WSZ0 117 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 TRAV8-2A0A0B4J237 113 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 TRDV1A0A1B0GX56 115 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 KNCNA6PVL3 124 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 C15orf62A8K5M9 175 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 BBIP1A8MTZ0 92 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 H3BQ15 152 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 M0R233 179 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 SULT2B1O00204 365 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 T-ENOLP0DO92 83 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 CA6P23280 308 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 OR10J1P30954 320 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 CDKN2AP42771 156 aaKnown RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 ATP4BP51164 291 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 HNRNPA3P51991 378 aaKnown RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 MTPNP58546 118 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 TAS2R46P59540 309 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 RPS18P62269 152 aaKnown RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 HLA-DRB3P79483 266 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 TTC32Q5I0X7 151 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 SBSNQ6UWP8 590 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 LCN15Q6UWW0 184 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 LRRTM1Q86UE6 522 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 NPWQ8N729 165 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 OR4C16Q8NGL9 310 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 OR8S1Q8NH09 359 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 LMO3Q8TAP4 145 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 PSMF1Q92530 271 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 SLC25A46Q96AG3 418 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 ZNF689Q96CS4 500 aaPredicted RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 IGF2BP2-AS1Q96M15 143 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 SPACA5Q96QH8 159 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 PKMYT1Q99640 499 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 SPIN2AQ99865 258 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 SPIN2BQ9BPZ2 258 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 SEC11CQ9BY50 192 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 TCEAL2Q9H3H9 227 aaPredicted RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 POMKQ9H5K3 350 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 MTFP1Q9UDX5 166 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 SLC2A6Q9UGQ3 507 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 TRMT112Q9UI30 125 aaKnown RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 RPUSD1Q9UJJ7 312 aaKnown RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 MRPS16Q9Y3D3 137 aaKnown RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 PAM16Q9Y3D7 125 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 RIC1Q4ADV7 1423 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 TNS2Q63HR2 1409 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 TRPM3Q9HCF6 1732 aaPredicted RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 COL1A2P08123 1366 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 TRGV11A0A075B6L2 103 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 TRAV4A0A0B4J268 109 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 FAM236AA0A1B0GUQ0 79 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 FAM236BA0A1B0GV22 79 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 A0A1W2PP18 115 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 MEIS3P1A6NDR6 274 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 OR4C45A6NMZ5 311 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 GABARAPH6UMI1 98 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 MYL12BO14950 172 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 PDCD6O75340 191 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 HLA-DRB1P01911 266 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 RNASE1P07998 156 aaKnown RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 RBMY1CP0DJD4 496 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 P0DMU3 169 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 FAM231AP0DMU4 169 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 FAM231CP0DMU5 169 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 IGHV4-31P0DP07 118 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 MPGP29372 298 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 RPL34P49207 117 aaKnown RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 THBS3P49746 956 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 NUDT2P50583 147 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 SEC61BP60468 96 aaKnown RBP3.38□□□□□ -1.87
BRCA1-220ENST00000492859 C1QTNF8P60827 252 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 CACNG7P62955 275 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 AKR1C1Q04828 323 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 KLRD1Q13241 179 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 PNOCQ13519 176 aa3.38□□□□□ -1.87
BRCA1-220ENST00000492859 KIAA1644Q3SXP7 199 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms