RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 CSPG4Q6UVK1 2322 aa9.32□□□□□ -0.92
COL27A1-204ENST00000477421 H0Y8G0 127 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 COX7A2P2O60397 106 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 PSPNO60542 156 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 NPY1RP25929 384 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 PRB3Q04118 309 aaPredicted RBP9.31□□□□□ -0.92
COL27A1-204ENST00000477421 RNF212Q495C1 297 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 KHDC3LQ587J8 217 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 BLNKQ8WV28 456 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 KIAA1549LQ6ZVL6 1849 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 ZNF503-AS2A6NEH8 195 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 DBX1A6NMT0 343 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 PSG5Q15238 335 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 MIC13Q5XKP0 118 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 H1FOOQ8IZA3 346 aaPredicted RBP9.31□□□□□ -0.92
COL27A1-204ENST00000477421 HIST1H2BAQ96A08 127 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 ZNF835Q9Y2P0 537 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 IGKV3D-15A0A087WSY6 115 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 J3QR06 171 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 SELLP14151 372 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 UBE2G1P62253 170 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 HFEQ30201 348 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 CMTM2Q8TAZ6 248 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 CORO2AQ92828 525 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 HES4Q9HCC6 221 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 ARFGEF3Q5TH69 2177 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 TGIF2-C20orf24A0A0A6YYL0 155 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 KIAA1324LA8MWY0 1029 aaPredicted RBP9.31□□□□□ -0.92
COL27A1-204ENST00000477421 PTBP3O95758 552 aaKnown RBP9.31□□□□□ -0.92
COL27A1-204ENST00000477421 HSPB1P04792 205 aaKnown RBP9.31□□□□□ -0.92
COL27A1-204ENST00000477421 CD82P27701 267 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 TAS2R45P59539 299 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 ATP6V1FQ16864 119 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 C9orf152Q5JTZ5 239 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 RCC1LQ96I51 464 aaKnown RBP9.31□□□□□ -0.92
COL27A1-204ENST00000477421 C18orf12Q96KH6 178 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 CALYQ9NYX4 217 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 ONECUT1Q9UBC0 465 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 MSRB2Q9Y3D2 182 aa9.31□□□□□ -0.92
COL27A1-204ENST00000477421 PIEZO1Q92508 2521 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 YLPM1P49750 1951 aaKnown RBP9.3□□□□□ -0.92
COL27A1-204ENST00000477421 NDUFB4O95168 129 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 CTRB1P17538 263 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 SLC35B1P78383 322 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 MEF2BQ02080 365 aaPredicted RBP9.3□□□□□ -0.92
COL27A1-204ENST00000477421 CTRB2Q6GPI1 263 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 TRAT1Q6PIZ9 186 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 LRP11Q86VZ4 500 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 DTX1Q86Y01 620 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 EIF4E3Q8N5X7 224 aaKnown RBP9.3□□□□□ -0.92
COL27A1-204ENST00000477421 FAM216AQ8WUB2 273 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 MRPS18CQ9Y3D5 142 aaKnown RBP9.3□□□□□ -0.92
COL27A1-204ENST00000477421 TRBV6-7A0A0A0MS04 114 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 CTXND1A0A1B0GTU2 59 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 FGF16O43320 207 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 PPIHO43447 177 aaKnown RBP9.3□□□□□ -0.92
COL27A1-204ENST00000477421 PLAUP00749 431 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 FABP1P07148 127 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 FAM3BP58499 235 aaPredicted RBP9.3□□□□□ -0.92
COL27A1-204ENST00000477421 HIST1H3AP68431 136 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 SERF2P84101 59 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 NRN1LQ496H8 165 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 FAM53AQ6NSI3 398 aaPredicted RBP9.3□□□□□ -0.92
COL27A1-204ENST00000477421 DNM1P46Q6ZS02 220 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 GINS3Q9BRX5 216 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 MIOXQ9UGB7 285 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 GOSR1O95249 250 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 THBS3P49746 956 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 ACP7Q6ZNF0 438 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 FAM216BQ8N7L0 139 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 ZBTB34Q8NCN2 500 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 CTDSP1Q9GZU7 261 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 GAL3ST2Q9H3Q3 398 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 SLC25A10Q9UBX3 287 aaPredicted RBP9.3□□□□□ -0.92
COL27A1-204ENST00000477421 NAT8Q9UHE5 227 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 RALYQ9UKM9 306 aaKnown RBP9.3□□□□□ -0.92
COL27A1-204ENST00000477421 FUT9Q9Y231 359 aa9.3□□□□□ -0.92
COL27A1-204ENST00000477421 IGHV2OR16-5A0A0B4J2B6 119 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 XKRY2A2RUG3 117 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 CHRNB4P30926 498 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 RHOBP62745 196 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 C1orf185Q5T7R7 199 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 TMEM42Q69YG0 159 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 CA5BP1Q8WTZ4 195 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 TRAPPC1Q9Y5R8 145 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 SZT2Q5T011 3432 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 OR4A8P0C604 315 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 OR10A7Q8NGE5 316 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 OR2T10Q8NGZ9 312 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 RPEQ96AT9 228 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 QTRT1Q9BXR0 403 aaKnown RBP9.29□□□□□ -0.92
COL27A1-204ENST00000477421 TMEM140Q9NV12 185 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 RAB29O14966 203 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 HPRT1P00492 218 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 FAM157CP0CG43 387 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 PGA5P0DJD9 388 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 CTAG1AP78358 180 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 HERPUD1Q15011 391 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 TNXAQ16473 311 aa9.29□□□□□ -0.92
COL27A1-204ENST00000477421 ACSF3Q4G176 576 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms