RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 MRPL3P09001 348 aaKnown RBP3.33□□□□□ -1.88
USP4-209ENST00000475873 OR9G9P0C7N8 305 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 RCC1P18754 421 aaPredicted RBP3.33□□□□□ -1.88
USP4-209ENST00000475873 ATF1P18846 271 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 FUT3P21217 361 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 LGALS7P47929 136 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 RIDAP52758 137 aaKnown RBP3.33□□□□□ -1.88
USP4-209ENST00000475873 RAB4BP61018 213 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 ATP5G2Q06055 141 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 CCDC58Q4VC31 144 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 TNFAIP8L3Q5GJ75 292 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 METTL21CQ5VZV1 264 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 CDPF1Q6NVV7 123 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 CLEC19AQ6UXS0 136 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 ZNF497Q6ZNH5 498 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 RASSF6Q6ZTQ3 369 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 LINC00528Q8N1L1 170 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.33□□□□□ -1.88
USP4-209ENST00000475873 C15orf53Q8NAA6 179 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 OR52L2PQ8NGH6 319 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 OR5AN1Q8NGI8 311 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 SETD6Q8TBK2 473 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 MUL1Q969V5 352 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 OTULINQ96BN8 352 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 OPALINQ96PE5 141 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 SLC5A7Q9GZV3 580 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 SLC2A9Q9NRM0 540 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 FAM212BQ9NTI7 297 aaPredicted RBP3.33□□□□□ -1.88
USP4-209ENST00000475873 CLEC5AQ9NY25 188 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 NKIRAS1Q9NYS0 192 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 LOC107986453A0A1B0GWG9 222 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 OR4C46A6NHA9 309 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 OR5H14A6NHG9 310 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 A6NHS1 94 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 RIIAD1A6NNX1 92 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 WRBO00258 174 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 SYT7O43581 403 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 SNX3O60493 162 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 GASTP01350 101 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 CTSDP07339 412 aaPredicted RBP3.32□□□□□ -1.88
USP4-209ENST00000475873 GSTP1P09211 210 aaKnown RBP3.32□□□□□ -1.88
USP4-209ENST00000475873 HTN3P15516 51 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 KCNJ3P48549 501 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 HNRNPA3P51991 378 aaKnown RBP3.32□□□□□ -1.88
USP4-209ENST00000475873 IFFO1Q0D2I5 559 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 C1orf146Q5VVC0 180 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 LEMD1Q68G75 181 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 DMKNQ6E0U4 476 aaPredicted RBP3.32□□□□□ -1.88
USP4-209ENST00000475873 ELP2Q6IA86 826 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 ETFRF1Q6IPR1 90 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 RPL13AP3Q6NVV1 102 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 TRAT1Q6PIZ9 186 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 ZNF66Q6ZN08 573 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 SSX6Q7RTT6 188 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 SAXO1Q8IYX7 474 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 PRSS35Q8N3Z0 413 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 FAM24BQ8N5W8 94 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 ZNF383Q8NA42 475 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 OR2T33Q8NG76 320 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 OR10K1Q8NGX5 313 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 RP9Q8TA86 221 aaKnown RBP3.32□□□□□ -1.88
USP4-209ENST00000475873 MARC2Q969Z3 335 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 FANCD2OSQ96PS1 177 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 TEX12Q9BXU0 123 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 MROQ9BYG7 248 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 Q9H3A6 140 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 MOB1AQ9H8S9 216 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 GID8Q9NWU2 228 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 SMPD3Q9NY59 655 aaPredicted RBP3.32□□□□□ -1.88
USP4-209ENST00000475873 PTTG2Q9NZH5 202 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 MRPL27Q9P0M9 148 aaKnown RBP3.32□□□□□ -1.88
USP4-209ENST00000475873 MAGEL2Q9UJ55 1249 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 IKZF2Q9UKS7 526 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 RNF24Q9Y225 148 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 WASHC3Q9Y3C0 194 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 ETV7Q9Y603 341 aa3.32□□□□□ -1.88
USP4-209ENST00000475873 A0A075B6Q4 140 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 IGHV3OR16-8A0A075B7F1 116 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 TRBV5-7A0A0A0MS05 114 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 SMIM30A4D0T7 59 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 SRRM4A7MD48 611 aaKnown RBP3.31□□□□□ -1.88
USP4-209ENST00000475873 H7C2Y5 167 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 NME4O00746 187 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 LCE2BO14633 110 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 RPP14O95059 124 aaKnown RBP3.31□□□□□ -1.88
USP4-209ENST00000475873 CCNB2O95067 398 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 RAB3DO95716 219 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 IFNGP01579 166 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 PLA2G1BP04054 148 aaKnown RBP3.31□□□□□ -1.88
USP4-209ENST00000475873 FABP1P07148 127 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 T-ENOLP0DO92 83 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 RPA2P15927 270 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 TFPI2P48307 235 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 LINC00315P59091 139 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 ACTR3P61158 418 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 PPP1R8Q12972 351 aaKnown RBP3.31□□□□□ -1.88
USP4-209ENST00000475873 IL13RA2Q14627 380 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 FAM106AQ4KMX7 169 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 C10orf55Q5SWW7 151 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 SYT6Q5T7P8 510 aaPredicted RBP3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms