RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SAC3D1A6NKF1 404 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 DFFBO76075 338 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 POLR2IP36954 125 aaKnown RBP5.71□□□□□ -1.5
USP54-211ENST00000474929 HCCSP53701 268 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 CCL18P55774 89 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 CDK5Q00535 292 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 RSU1Q15404 277 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 SYT6Q5T7P8 510 aaPredicted RBP5.71□□□□□ -1.5
USP54-211ENST00000474929 OR13C9Q8NGT0 318 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 ADAT3Q96EY9 351 aaPredicted RBP5.71□□□□□ -1.5
USP54-211ENST00000474929 PELI1Q96FA3 418 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 CMTM3Q96MX0 182 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 TMEM70Q9BUB7 260 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 TTTY10Q9BZA0 68 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 IFI27L2Q9H2X8 130 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 PAK1IP1Q9NWT1 392 aaPredicted RBP5.71□□□□□ -1.5
USP54-211ENST00000474929 ZNF257Q9Y2Q1 563 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 X6R8D5 127 aa5.71□□□□□ -1.5
USP54-211ENST00000474929 PRR32B1ATL7 298 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 M0R129 80 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 RBMXL2O75526 392 aaKnown RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 OR2J3O76001 311 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 ACTL6BO94805 426 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 CD5P06127 495 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 RPSAP08865 295 aaKnown RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 MRPL3P09001 348 aaKnown RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 CT45A6P0DMU7 189 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 CT45A5P0DMU8 189 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 CT45A7P0DMV0 189 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 FCGR1AP12314 374 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 SLC2A5P22732 501 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 PPP1CCP36873 323 aaKnown RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 RBM11P57052 281 aaKnown RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 RPS27AP62979 156 aaKnown RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 PAFAH1B2P68402 229 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 SSBP2P81877 361 aaPredicted RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 KIR3DS1Q14943 382 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 KISS1Q15726 138 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 PIGYQ3MUY2 71 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 DMKNQ6E0U4 476 aaPredicted RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 BCDIN3DQ7Z5W3 292 aaKnown RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 SRSF12Q8WXF0 261 aaKnown RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 GALMQ96C23 342 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 CENPNQ96H22 339 aaPredicted RBP5.7□□□□□ -1.5
USP54-211ENST00000474929 CXorf58Q96LI9 332 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 OR2A7Q96R45 310 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 IL4I1Q96RQ9 567 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 APOL4Q9BPW4 351 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 MAGT1Q9H0U3 335 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 TAF9BQ9HBM6 251 aa5.7□□□□□ -1.5
USP54-211ENST00000474929 MCRIP1C9JLW8 97 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 ITGB1BP1O14713 200 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 PRKYO43930 277 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 ZNF780AO75290 641 aaPredicted RBP5.69□□□□□ -1.5
USP54-211ENST00000474929 GPX5O75715 221 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 RPP14O95059 124 aaKnown RBP5.69□□□□□ -1.5
USP54-211ENST00000474929 BAG2O95816 211 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 MAS1P04201 325 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 IGKV1-16P04430 117 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 CTSDP07339 412 aaPredicted RBP5.69□□□□□ -1.5
USP54-211ENST00000474929 HIST1H1BP16401 226 aaKnown RBP5.69□□□□□ -1.5
USP54-211ENST00000474929 GNRHRP30968 328 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 GNMTQ14749 295 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 OXA1LQ15070 435 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 ZIK1Q3SY52 487 aaPredicted RBP5.69□□□□□ -1.5
USP54-211ENST00000474929 CLEC19AQ6UXS0 136 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 GSG1LQ6UXU4 331 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 GLDNQ6ZMI3 551 aaPredicted RBP5.69□□□□□ -1.5
USP54-211ENST00000474929 PLEKHG7Q6ZR37 379 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 FAM220AQ7Z4H9 259 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 SLC35F2Q8IXU6 374 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 TTC9CQ8N5M4 171 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 OR52N1Q8NH53 320 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 TMEM190Q8WZ59 177 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 FGGYQ96C11 551 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 CIB1Q99828 191 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 SCRT1Q9BWW7 348 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 C1QTNF4Q9BXJ3 329 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 Q9H3A6 140 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 RIBC2Q9H4K1 309 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 CLN6Q9NWW5 311 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 IL36GQ9NZH8 169 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 H2AFY2Q9P0M6 372 aaPredicted RBP5.69□□□□□ -1.5
USP54-211ENST00000474929 ABRACLQ9P1F3 81 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 OAZ3Q9UMX2 235 aa5.69□□□□□ -1.5
USP54-211ENST00000474929 PUS1Q9Y606 427 aaKnown RBP eCLIP5.69□□□□□ -1.5
USP54-211ENST00000474929 SULT1C4O75897 302 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 ISG15P05161 165 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 GNB3P16520 340 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 TAGLNQ01995 201 aaKnown RBP5.68□□□□□ -1.5
USP54-211ENST00000474929 TNXAQ16473 311 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 VMA21Q3ZAQ7 101 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 RNASE12Q5GAN4 147 aaKnown RBP5.68□□□□□ -1.5
USP54-211ENST00000474929 KDM4DQ6B0I6 523 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 UNQ9165/PRO28630Q6UXU0 137 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 GAPTQ8N292 157 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 OR4K15Q8NH41 348 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 TNFAIP8L1Q8WVP5 186 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 EDARADDQ8WWZ3 215 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 DNAJC9Q8WXX5 260 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms