RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ARHGAP32A7KAX9 2087 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 GBF1Q92538 1859 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 NDUFB2O95178 105 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 TYMSP04818 313 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 HLA-DQB2P05538 268 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 HINT1P49773 126 aaPredicted RBP1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 BLVRAP53004 296 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 RBM11P57052 281 aaKnown RBP1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 MLLT11Q13015 90 aaPredicted RBP1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 TPRXLQ17RH7 258 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 SLC36A2Q495M3 483 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 TNFAIP8L2Q6P589 184 aaPredicted RBP1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 UBL4BQ8N7F7 174 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 OR4X2Q8NGF9 303 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 HAVCR2Q8TDQ0 301 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 DCANP1Q8TF63 244 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 MRPS24Q96EL2 167 aaKnown RBP1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 SLC35G5Q96KT7 338 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 NMNAT3Q96T66 252 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 HES4Q9HCC6 221 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 NDUFB11Q9NX14 153 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 BABAM2Q9NXR7 383 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 NKIRAS1Q9NYS0 192 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 PRO2289Q9P1D8 64 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 POLR3HQ9Y535 204 aaPredicted RBP1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 KIF15Q9NS87 1388 aa1.07□□□□□ -2.24
CCDC88A-212ENST00000474059 PXDNLA1KZ92 1463 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 A0A087WUU8 490 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 A0A1W2PQD3 144 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 C2orf74A8MZ97 194 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 C9JCJ5 164 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 PFDN6O15212 129 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 SSNA1O43805 119 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 REG1AP05451 166 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 BPGMP07738 259 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 C8orf88P0DMB2 117 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 CD24P25063 80 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 DDTP30046 118 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 PEBP1P30086 187 aaKnown RBP1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 RPL27AP46776 148 aaKnown RBP1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 GABRA2P47869 451 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 TBPL1P62380 186 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 HOXC5Q00444 222 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 GNA12Q03113 381 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 ZNF90Q03938 601 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 PLPPR5Q32ZL2 321 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 KRTAP21-3Q3LHN1 58 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 KRTAP5-10Q6L8G5 202 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 LHFPL1Q86WI0 220 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 TMEM161BQ8NDZ6 487 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 SMCR5Q8TEV8 140 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 C12orf43Q96C57 262 aaKnown RBP1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 SFRP2Q96HF1 295 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 TTTY13Q9BZ97 58 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 MAP1LC3AQ9H492 121 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 POLR1DQ9Y2S0 133 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 ABCC11Q96J66 1382 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 RTEL1-TNFRSF6BF6WH68 1400 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 MYO9BQ13459 2157 aa1.06□□□□□ -2.24
CCDC88A-212ENST00000474059 SIPA1L1O43166 1804 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 DENND4BO75064 1496 aaPredicted RBP1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 BAHCC1Q9P281 2608 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 IGLV3-9A0A075B6K5 115 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 TRGV5A0A0B4J1U4 118 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 ARRDC5A6NEK1 342 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 H0Y980 276 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 M0QZ92 97 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 CXCR6O00574 342 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 BHLHE40O14503 412 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 DEXIO95424 95 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 APOMO95445 188 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 NPYP01303 97 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 IL3P08700 152 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 OCM2P0CE71 109 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 RPL12P30050 165 aaKnown RBP1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 UAP1Q16222 522 aaPredicted RBP1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 SBSNQ6UWP8 590 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 RASSF6Q6ZTQ3 369 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 SLC35E3Q7Z769 313 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 COMMD7Q86VX2 200 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 GPHB5Q86YW7 130 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 DDI1Q8WTU0 396 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 RAB2BQ8WUD1 216 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 CCL13Q99616 98 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 TIMM21Q9BVV7 248 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 TMEM222Q9H0R3 208 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 HRASLSQ9HDD0 168 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 ZNHIT6Q9NWK9 470 aaKnown RBP1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 TAAR3PQ9P1P4 343 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 DKKL1Q9UK85 242 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 ABCC12Q96J65 1359 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 NCKAP5O14513 1909 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 GRIN2BQ13224 1484 aa1.05□□□□□ -2.24
CCDC88A-212ENST00000474059 RFPL4AA6NLU0 287 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 C21orf140B9A014 251 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 RFPL4AL1F8VTS6 287 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 J3QQQ9 107 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 TXNDC9O14530 226 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 COX7A2LO14548 114 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 APOEP02649 317 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms