RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 BCL7BQ9BQE9 202 aa10.22□□□□□ -0.77
COL28A1-206ENST00000465339 RBMX2Q9Y388 322 aaKnown RBP10.22□□□□□ -0.77
COL28A1-206ENST00000465339 IGKV1D-13A0A0B4J2D9 117 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 MEIS3P1A6NDR6 274 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 LINC00473A8K010 186 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 SHOXO15266 292 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 SLC25A17O43808 307 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 HPGDSO60760 199 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 IGLV2-14P01704 120 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 IGKV1-13P0DP09 117 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 NAT1P18440 290 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 PSMB8P28062 276 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 CRIP2P52943 208 aaPredicted RBP10.21□□□□□ -0.77
COL28A1-206ENST00000465339 TMBIM6P55061 237 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 CDK10Q15131 360 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 MSMO1Q15800 293 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 TMEM65Q6PI78 240 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 PPP1R27Q86WC6 154 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 CLVS1Q8IUQ0 354 aaPredicted RBP10.21□□□□□ -0.77
COL28A1-206ENST00000465339 ZNF695Q8IW36 515 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 TCTEX1D1Q8N7M0 179 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 MINDY2Q8NBR6 621 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 ZBTB34Q8NCN2 500 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 OSR1Q8TAX0 266 aaPredicted RBP10.21□□□□□ -0.77
COL28A1-206ENST00000465339 RAB2BQ8WUD1 216 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 SNAPC3Q92966 411 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 HARBI1Q96MB7 349 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 CLCC1Q96S66 551 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 SCPEP1Q9HB40 452 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 ANAPC10Q9UM13 185 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 MRPS7Q9Y2R9 242 aaKnown RBP10.21□□□□□ -0.77
COL28A1-206ENST00000465339 PRELID3BQ9Y3B1 194 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 NUBP2Q9Y5Y2 271 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 WSB1Q9Y6I7 421 aa10.21□□□□□ -0.77
COL28A1-206ENST00000465339 NOTCH3Q9UM47 2321 aa10.21□□□□□ -0.78
COL28A1-206ENST00000465339 NUDT19A8MXV4 375 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 G3V318 75 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 TPPPO94811 219 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 PPYP01298 95 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 IGLV1-40P01703 118 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 IGLV2-23P01705 113 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 FCER2P06734 321 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 AADACP22760 399 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 TAS2R46P59540 309 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 AKIRIN2Q53H80 203 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 DHRS11Q6UWP2 260 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 ZNF66Q6ZN08 573 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 KCTD9Q7L273 389 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 OVCH2Q7RTZ1 564 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 TEX45Q8NA69 505 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 KLHL30-AS1Q8NEE0 82 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 GPX8Q8TED1 209 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 BORCS5Q969J3 196 aa10.2□□□□□ -0.78
COL28A1-206ENST00000465339 FAM25AB3EWG3 89 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 FAM25CB3EWG5 89 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 FAM25GB3EWG6 89 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 SULT1C2O00338 296 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 CRYZL1O95825 349 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 CA2P00918 260 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 CRYGBP07316 175 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 EGR2P11161 476 aaPredicted RBP10.19□□□□□ -0.78
COL28A1-206ENST00000465339 MYCNOSP40205 109 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 NDPQ00604 133 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 DEFA6Q01524 100 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 DYRK1AQ13627 763 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 VMA21Q3ZAQ7 101 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 C19orf54Q5BKX5 351 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 REC114Q7Z4M0 266 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 MFSD4AQ8N468 514 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 ABHD5Q8WTS1 349 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 C15orf40Q8WUR7 153 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 SECTM1Q8WVN6 248 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 CCL28Q9NRJ3 127 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 ADAM30Q9UKF2 790 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 FBXO7Q9Y3I1 522 aa10.19□□□□□ -0.78
COL28A1-206ENST00000465339 CMYA5Q8N3K9 4069 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 SRRM4A7MD48 611 aaKnown RBP10.18□□□□□ -0.78
COL28A1-206ENST00000465339 FCGR3BO75015 233 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 CNIH1O95406 144 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 CD40LGP29965 261 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 RFX2P48378 723 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 UBE2KP61086 200 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 RPL30P62888 115 aaKnown RBP10.18□□□□□ -0.78
COL28A1-206ENST00000465339 EIF4EBP1Q13541 118 aaPredicted RBP10.18□□□□□ -0.78
COL28A1-206ENST00000465339 FXYD3Q14802 87 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 SPCS2Q15005 226 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 ECSCRQ19T08 205 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 PYHIN1Q6K0P9 492 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 UNQ5815/PRO19632Q6UWF5 114 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 LCNL1Q6ZST4 164 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 C18orf65Q6ZTR6 163 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 C8orf86Q6ZUL3 223 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 SNX29P2Q8IUI4 249 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 LYSMD2Q8IV50 215 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 OR5M8Q8NGP6 311 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 OR5H2Q8NGV7 314 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 MYOZ3Q8TDC0 251 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 ARPC1AQ92747 370 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 UBE2E2Q96LR5 201 aa10.18□□□□□ -0.78
COL28A1-206ENST00000465339 DCUN1D5Q9BTE7 237 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms