RNA–Protein interactions for RNA: ENST00000456953.5

SNHG17-208, Transcript of small nucleolar RNA host gene 17, human

TSL 3 BASIC

Gene SNHG17, Length 546 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG17-208	ENST00000456953	MRPL30	Q8TCC3	161 aa	Known RBP	10.1	□□□□□ -0.79
SNHG17-208	ENST00000456953	ELF5	Q9UKW6	265 aa	Predicted RBP	10.1	□□□□□ -0.79
SNHG17-208	ENST00000456953	ARPC1B	O15143	372 aa	Known RBP	10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	NAPSA	O96009	420 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	GZMH	P20718	246 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	RNASE12	Q5GAN4	147 aa	Known RBP	10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	TRAT1	Q6PIZ9	186 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	CCDC190	Q86UF4	302 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	GAPT	Q8N292	157 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	FCAMR	Q8WWV6	532 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	FLYWCH2	Q96CP2	140 aa	Known RBP	10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	ABHD1	Q96SE0	405 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	ST6GALNAC5	Q9BVH7	336 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	TUBA4B	Q9H853	241 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	SCPEP1	Q9HB40	452 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	IFT46	Q9NQC8	304 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	PARP11	Q9NR21	331 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	KIAA1456	Q9P272	454 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	MGAT4A	Q9UM21	535 aa		10.09	□□□□□ -0.79
SNHG17-208	ENST00000456953	DNAH10	Q8IVF4	4471 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	TRBV6-6	A0A0A6YYG2	114 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	C12orf77	C9JDV5	145 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	SDCBP	O00560	298 aa	Predicted RBP	10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	LY6G6C	O95867	125 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	HLA-DRB1	P01911	266 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	HSPB1	P04792	205 aa	Known RBP	10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	FCGR3A	P08637	254 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	RCC1	P18754	421 aa	Predicted RBP	10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	DTYMK	P23919	212 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	CBX5	P45973	191 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	ZNF137P	P52743	207 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	MRPS10	P82664	201 aa	Known RBP	10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	MMD	Q15546	238 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	PYDC2	Q56P42	97 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	LINC00299	Q6ZSB3	139 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	PRR18	Q8N4B5	295 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	RSRP1	Q9BUV0	290 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	HIPK2	Q9H2X6	1198 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	RETN	Q9HD89	108 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953		Q9N2K0	584 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	RAB9B	Q9NP90	201 aa		10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	ZNF230	Q9UIE0	474 aa	Predicted RBP	10.08	□□□□□ -0.8
SNHG17-208	ENST00000456953	IGHV7-81	A0A0B4J1V7	117 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	MEIS3P1	A6NDR6	274 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	SULT1C2	O00338	296 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	SPINT2	O43291	252 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	ORC5	O43913	435 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	SSX5	O60225	188 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	FCER2	P06734	321 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	PTBP1	P26599	531 aa	Known RBP eCLIP	10.07	□□□□□ -0.8	7e-84	■□□□□ 9.5
SNHG17-208	ENST00000456953	ETV6	P41212	452 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	ZNF45	Q02386	682 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953		Q3ZCU0	254 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	SLC25A48	Q6ZT89	311 aa	Known RBP	10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	S100Z	Q8WXG8	99 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	MAFIP	Q8WZ33	124 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	ARL11	Q969Q4	196 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	RBMXL1	Q96E39	390 aa	Known RBP	10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	TAF9B	Q9HBM6	251 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	MBNL3	Q9NUK0	354 aa	Known RBP	10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	GFOD1	Q9NXC2	390 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953		V9GYH0	126 aa		10.07	□□□□□ -0.8
SNHG17-208	ENST00000456953	TRDC	B7Z8K6	153 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953		H0Y980	276 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	C15orf65	H3BRN8	121 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	GABARAP	H6UMI1	98 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	CTDSPL	O15194	276 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	RBBP9	O75884	186 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	LSAMP	Q13449	338 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	C19orf54	Q5BKX5	351 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	ZNF880	Q6PDB4	577 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	ZNF554	Q86TJ5	538 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	GTSCR1	Q86UQ5	136 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	OR52I2	Q8NH67	350 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	UBALD1	Q8TB05	177 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	GPX8	Q8TED1	209 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	IL1F10	Q8WWZ1	152 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	GALM	Q96C23	342 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	FAM110A	Q9BQ89	295 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	SOST	Q9BQB4	213 aa		10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953	FOXA2	Q9Y261	457 aa	Predicted RBP	10.06	□□□□□ -0.8
SNHG17-208	ENST00000456953		A0A1W2PN81	502 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	FABP7	O15540	132 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	SOX15	O60248	233 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	HBZ	P02008	142 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	RCVRN	P35243	200 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	CHRNA7	P36544	502 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	CRIP2	P52943	208 aa	Predicted RBP	10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	ARPC4	P59998	168 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	ACTB	P60709	375 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	HLA-DRB3	P79483	266 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	HMGN3	Q15651	99 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	HOGA1	Q86XE5	327 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	GVQW1	Q8N7I0	195 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	TCTEX1D1	Q8N7M0	179 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	BEST4	Q8NFU0	473 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	OR1L1	Q8NH94	360 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	SMIM4	Q8WVI0	70 aa		10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	THAP7	Q9BT49	309 aa	Predicted RBP	10.05	□□□□□ -0.8
SNHG17-208	ENST00000456953	SLC31A2	O15432	143 aa		10.04	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms