RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 LRRC34Q8IZ02 419 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 DAND5Q8N907 189 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 OR10D3Q8NH80 312 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 SMCR5Q8TEV8 140 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 DNAJB3Q8WWF6 145 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 CPNE2Q96FN4 548 aaPredicted RBP1.13□□□□□ -2.23
USP40-209ENST00000452724 ZNF514Q96K75 400 aaPredicted RBP1.13□□□□□ -2.23
USP40-209ENST00000452724 HDHD2Q9H0R4 259 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 IMP3Q9NV31 184 aaKnown RBP1.13□□□□□ -2.23
USP40-209ENST00000452724 EMC3Q9P0I2 261 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 HHLA3Q9XRX5 114 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 HDGFL3Q9Y3E1 203 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 SCN9AQ15858 1988 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 A0A0A6YYH2 397 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 A6NJ64 397 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 A8MUN3 132 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 M0R381 172 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 ATP8B1O43520 1251 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 MAGEA12P43365 314 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 RBM11P57052 281 aaKnown RBP1.12□□□□□ -2.23
USP40-209ENST00000452724 SLC38A11Q08AI6 406 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 FAM19A5Q7Z5A7 132 aaPredicted RBP1.12□□□□□ -2.23
USP40-209ENST00000452724 Q8N402 240 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 OR8B12Q8NGG6 310 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 MS4A6EQ96DS6 147 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 CMTM5Q96DZ9 223 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 SMIM19Q96E16 107 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 HES4Q9HCC6 221 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 BABAM2Q9NXR7 383 aa1.12□□□□□ -2.23
USP40-209ENST00000452724 C1orf232A0A0U1RR37 186 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 TINCRA0A1B0GVN0 87 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 BHLHE40O14503 412 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 TXNDC9O14530 226 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 AZIN1O14977 448 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 MT-CO2P00403 227 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 NPYP01303 97 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 DDTP30046 118 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 RPL27AP46776 148 aaKnown RBP1.11□□□□□ -2.23
USP40-209ENST00000452724 GABRA2P47869 451 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 TMEM33P57088 247 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 TMEM258P61165 79 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 HOXC5Q00444 222 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 FABP5Q01469 135 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 GLO1Q04760 184 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 GNA13Q14344 377 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 KIAA2026Q5HYC2 2103 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 OR10K2Q6IF99 312 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 FUNDC1Q8IVP5 155 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 RIBC1Q8N443 379 aaPredicted RBP1.11□□□□□ -2.23
USP40-209ENST00000452724 TMEM251Q8N6I4 163 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 ASB13Q8WXK3 278 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 SFRP2Q96HF1 295 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 DHRS9Q9BPW9 319 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 TMEM222Q9H0R3 208 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 MS4A6AQ9H2W1 248 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 PLEKHJ1Q9NW61 149 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 TAAR3PQ9P1P4 343 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 KLK5Q9Y337 293 aaPredicted RBP1.11□□□□□ -2.23
USP40-209ENST00000452724 RIMS2Q9UQ26 1411 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 GRIN2BQ13224 1484 aa1.11□□□□□ -2.23
USP40-209ENST00000452724 FLG2Q5D862 2391 aaPredicted RBP1.11□□□□□ -2.23
USP40-209ENST00000452724 A0A1W2PP64 1363 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 IGHV3-64A0A075B6Q5 118 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 C5orf49A4QMS7 147 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 GOLGA8KD6RF30 607 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 GOLGA8MH3BSY2 632 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 SSNA1O43805 119 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 TPM3P06753 285 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 ZNF705DP0CH99 300 aaPredicted RBP1.1□□□□□ -2.23
USP40-209ENST00000452724 ZNF705BP0CI00 300 aaPredicted RBP1.1□□□□□ -2.23
USP40-209ENST00000452724 C8orf88P0DMB2 117 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 LYNX1P0DP58 116 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 CXCL2P19875 107 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 CD40LGP29965 261 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 IFNGR2P38484 337 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 CLDN12P56749 244 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 LGALS9BQ3B8N2 356 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 SLC36A2Q495M3 483 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 TNFAIP8L2Q6P589 184 aaPredicted RBP1.1□□□□□ -2.23
USP40-209ENST00000452724 FAM151BQ6UXP7 276 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 OTUD6BQ8N6M0 293 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 PACRGLQ8N7B6 248 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 JOSD2Q8TAC2 188 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 ASB17Q8WXJ9 295 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 RNASE6Q93091 150 aaKnown RBP1.1□□□□□ -2.23
USP40-209ENST00000452724 NSRP1Q9H0G5 558 aaKnown RBP1.1□□□□□ -2.23
USP40-209ENST00000452724 POLR3HQ9Y535 204 aaPredicted RBP1.1□□□□□ -2.23
USP40-209ENST00000452724 PCYT1BQ9Y5K3 369 aaPredicted RBP1.1□□□□□ -2.23
USP40-209ENST00000452724 LAMB2P55268 1798 aa1.1□□□□□ -2.23
USP40-209ENST00000452724 A0A1B0GW54 56 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 OR6C6A6NF89 314 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 BIRC5O15392 142 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 C1QCP02747 245 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 UGT2B7P16662 529 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 CXCL3P19876 107 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 CCR2P41597 374 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 CTBP2P56545 445 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 RPS24P62847 133 aaKnown RBP1.09□□□□□ -2.23
USP40-209ENST00000452724 TPM4P67936 248 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 OR13C8Q8NGS7 320 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms