RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 LIN54Q6MZP7 749 aa11.31□□□□□ -0.6
COL3A1-203ENST00000450867 OR5AU1Q8NGC0 362 aa11.31□□□□□ -0.6
COL3A1-203ENST00000450867 OR6F1Q8NGZ6 308 aa11.31□□□□□ -0.6
COL3A1-203ENST00000450867 OSR1Q8TAX0 266 aaPredicted RBP11.31□□□□□ -0.6
COL3A1-203ENST00000450867 DGCR14Q96DF8 476 aaKnown RBP11.31□□□□□ -0.6
COL3A1-203ENST00000450867 NOL4LQ96MY1 436 aaPredicted RBP11.31□□□□□ -0.6
COL3A1-203ENST00000450867 ZNF2Q9BSG1 426 aaPredicted RBP11.31□□□□□ -0.6
COL3A1-203ENST00000450867 DCUN1D5Q9BTE7 237 aa11.31□□□□□ -0.6
COL3A1-203ENST00000450867 SLC5A7Q9GZV3 580 aa11.31□□□□□ -0.6
COL3A1-203ENST00000450867 FXYD6Q9H0Q3 95 aa11.31□□□□□ -0.6
COL3A1-203ENST00000450867 FBXL15Q9H469 300 aa11.31□□□□□ -0.6
COL3A1-203ENST00000450867 CCL28Q9NRJ3 127 aa11.31□□□□□ -0.6
COL3A1-203ENST00000450867 PRELID3BQ9Y3B1 194 aa11.31□□□□□ -0.6
COL3A1-203ENST00000450867 PSMB11A5LHX3 300 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 RBFOX2O43251 390 aaKnown RBP eCLIP11.3□□□□□ -0.6
COL3A1-203ENST00000450867 GNRHRP30968 328 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 BRWD1-AS2P59051 145 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 C19orf54Q5BKX5 351 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 FOXB2Q5VYV0 432 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 CENPVQ7Z7K6 275 aaPredicted RBP11.3□□□□□ -0.6
COL3A1-203ENST00000450867 MFSD4AQ8N468 514 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 ARRDC1Q8N5I2 433 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 COMMD1Q8N668 190 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 RNF152Q8N8N0 203 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 TMEM229BQ8NBD8 167 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 HARBI1Q96MB7 349 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 GON7Q9BXV9 100 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 OR51J1Q9H342 316 aa11.3□□□□□ -0.6
COL3A1-203ENST00000450867 DPPA5A6NC42 116 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 SRRM4A7MD48 611 aaKnown RBP11.29□□□□□ -0.6
COL3A1-203ENST00000450867 CRYZL1O95825 349 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 CD3DP04234 171 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 PTBP1P26599 531 aaKnown RBP eCLIP11.29□□□□□ -0.6
COL3A1-203ENST00000450867 KIR2DS2P43631 304 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 UCP3P55916 312 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 FXYD4P59646 89 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 NDPQ00604 133 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 IL18Q14116 193 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 C2orf68Q2NKX9 166 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 C10orf99Q6UWK7 81 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 ZNF562Q6V9R5 426 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 ZNF818PQ6ZRF7 136 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 CCDC190Q86UF4 302 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 LHFPL1Q86WI0 220 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 TMEM17Q86X19 198 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 NDUFA11Q86Y39 141 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 OR4X2Q8NGF9 303 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 METTL1Q9UBP6 276 aaKnown RBP11.29□□□□□ -0.6
COL3A1-203ENST00000450867 V9GYH0 126 aa11.29□□□□□ -0.6
COL3A1-203ENST00000450867 NOTCH1P46531 2555 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 FCN1O00602 326 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 SHOXO15266 292 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 ATP6V0E1O15342 81 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 SLC25A17O43808 307 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 IGHG4P01861 327 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 PPIFP30405 207 aaKnown RBP11.28□□□□□ -0.6
COL3A1-203ENST00000450867 ETV6P41212 452 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 TAS2R19P59542 299 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 UBE2KP61086 200 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 SLC35B1P78383 322 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 CX3CL1P78423 397 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 SSBP2P81877 361 aaPredicted RBP11.28□□□□□ -0.6
COL3A1-203ENST00000450867 MRGPRG-AS1Q2M3A8 158 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 RNASE10Q5GAN6 216 aaKnown RBP11.28□□□□□ -0.6
COL3A1-203ENST00000450867 AADACL3Q5VUY0 350 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 PPP1R27Q86WC6 154 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 C11orf44Q8N8P7 122 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 TEX45Q8NA69 505 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 OR4S2Q8NH73 311 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 TCTEX1D2Q8WW35 142 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 CITED2Q99967 270 aaPredicted RBP11.28□□□□□ -0.6
COL3A1-203ENST00000450867 TAS2R8Q9NYW2 309 aa11.28□□□□□ -0.6
COL3A1-203ENST00000450867 FABP12A6NFH5 140 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 M0QYG6 137 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 FCGR3BO75015 233 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 OPN1MWP04001 364 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 CSF1P09603 554 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 OPN1MW2P0DN77 364 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 OPN1MW3P0DN78 364 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 S100A5P33763 92 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 TSPAN5P62079 268 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 CATR1Q13166 79 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 FOXE3Q13461 319 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 PLGLAQ15195 96 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 RNASE12Q5GAN4 147 aaKnown RBP11.27□□□□□ -0.61
COL3A1-203ENST00000450867 LPCAT3Q6P1A2 487 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 TCTEX1D1Q8N7M0 179 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 MINDY2Q8NBR6 621 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 RSRP1Q9BUV0 290 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 TINAGL1Q9GZM7 467 aaPredicted RBP11.27□□□□□ -0.61
COL3A1-203ENST00000450867 TPSG1Q9NRR2 321 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 LINC00527Q9UJ94 153 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 FBXO7Q9Y3I1 522 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 TSSC4Q9Y5U2 329 aaPredicted RBP11.27□□□□□ -0.61
COL3A1-203ENST00000450867 NUBP2Q9Y5Y2 271 aa11.27□□□□□ -0.61
COL3A1-203ENST00000450867 GPR31O00270 319 aa11.26□□□□□ -0.61
COL3A1-203ENST00000450867 CA2P00918 260 aa11.26□□□□□ -0.61
COL3A1-203ENST00000450867 IGLV1-40P01703 118 aa11.26□□□□□ -0.61
COL3A1-203ENST00000450867 ELANEP08246 267 aa11.26□□□□□ -0.61
COL3A1-203ENST00000450867 ZNF735P0CB33 412 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms