RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 KCNMB2Q9Y691 235 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 IGKV1D-42A0A075B6H8 117 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 ZP1P60852 638 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 RPS20P60866 119 aaKnown RBP6.68□□□□□ -1.34
NEDD9-204ENST00000448183 ADIPOQQ15848 244 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 KRTCAP3Q53RY4 240 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 FAM214BQ7L5A3 538 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 HIST1H4GQ99525 98 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 OTX1P32242 354 aaPredicted RBP6.68□□□□□ -1.34
NEDD9-204ENST00000448183 TSPAN7P41732 249 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 SNAI3Q3KNW1 292 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 DNLZQ5SXM8 178 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 WFDC3Q8IUB2 231 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 OR8G5Q8NG78 346 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 OR51G1Q8NGK1 321 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 CTHRC1Q96CG8 243 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 SFRP2Q96HF1 295 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 WFIKKN1Q96NZ8 548 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 RPRMQ9NS64 109 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 TCF19Q9Y242 345 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 B4E171 279 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 ZNF826PQ6ZT77 177 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 TCF24Q7RTU0 167 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 CACNA1DQ01668 2161 aa6.68□□□□□ -1.34
NEDD9-204ENST00000448183 SHANK3Q9BYB0 1731 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 LCN2P80188 198 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 EFNB1P98172 346 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 MESP2Q0VG99 397 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 FHL5Q5TD97 284 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 ZNF818PQ6ZRF7 136 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 SRSF12Q8WXF0 261 aaKnown RBP6.67□□□□□ -1.34
NEDD9-204ENST00000448183 PMCHL2Q9BQD1 86 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 CALYQ9NYX4 217 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 MIA3Q5JRA6 1907 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 KIF13BQ9NQT8 1826 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 NPIPB13A6NJU9 1138 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 NPIPB4C9JG80 1138 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 NPIPB6E9PJ23 425 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 H7C2G1 150 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 SMIM10L1P0DMW3 83 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 AMMECR1LQ6DCA0 310 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 LAMTOR1Q6IAA8 161 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 STPG3Q8N7X2 389 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 OR10J6PQ8NGY7 276 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 SMIM10Q96HG1 83 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 PRDM14Q9GZV8 571 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 KIAA1217Q5T5P2 1943 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 IGHV3-72A0A0B4J1Y9 119 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 C4orf51C9J302 202 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 S1PR2O95136 353 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 COX5BP10606 129 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 LOXL3P58215 753 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 C19orf48Q6RUI8 117 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 GATAD1Q8WUU5 269 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 ITLN1Q8WWA0 313 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 RCC1LQ96I51 464 aaKnown RBP6.67□□□□□ -1.34
NEDD9-204ENST00000448183 JPT1Q9UK76 154 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 ESPL1Q14674 2120 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 MSGN1A6NI15 193 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 ZNF441Q8N8Z8 693 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 NABP2Q9BQ15 211 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 CEP250Q9BV73 2442 aa6.67□□□□□ -1.34
NEDD9-204ENST00000448183 LOC390937A0A1W2PQ73 354 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 DPRXA6NFQ7 191 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 NUDT3O95989 172 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 HOXB1P14653 301 aaPredicted RBP6.66□□□□□ -1.34
NEDD9-204ENST00000448183 GCHFRP30047 84 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 ZNF600Q6ZNG1 722 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 ATOH7Q8N100 152 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 C16orf92Q96LL3 132 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 NEU1Q99519 415 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 MRPL32Q9BYC8 188 aaKnown RBP6.66□□□□□ -1.34
NEDD9-204ENST00000448183 TMEM56-RWDD3S4R434 201 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 RBFOX2O43251 390 aaKnown RBP eCLIP6.66□□□□□ -1.34
NEDD9-204ENST00000448183 ZIC3O60481 467 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 PRSS2P07478 247 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 CELA2AP08217 269 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 SCGB1A1P11684 91 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 CBLN1P23435 193 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 PTGDSP41222 190 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 ATP5IP56385 69 aaPredicted RBP6.66□□□□□ -1.34
NEDD9-204ENST00000448183 CTAG1AP78358 180 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 TFF2Q03403 129 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 TGIF1Q15583 401 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 CYP2G1PQ6ZSU1 146 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 DYNLRB2Q8TF09 96 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 WBP1LQ9NX94 342 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 A0A0G2JK05 382 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 KLF4O43474 513 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 SLC25A17O43808 307 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 LIPFP07098 398 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 GPR6P46095 362 aaPredicted RBP6.66□□□□□ -1.34
NEDD9-204ENST00000448183 GFRA1P56159 465 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 ZXDCQ2QGD7 858 aaPredicted RBP6.66□□□□□ -1.34
NEDD9-204ENST00000448183 C19orf54Q5BKX5 351 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 ABHD12Q8N2K0 398 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 DRAM1Q8N682 238 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 IDI2-AS1Q9NZ38 188 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 IGHV1-45A0A0A0MS14 117 aa6.66□□□□□ -1.34
NEDD9-204ENST00000448183 A0A1W2PS18 150 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms