RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 RAB19A4D1S5 217 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 PPP5D1E7EU14 171 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 PROB1E7EW31 1015 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 DNASE2O00115 360 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-213ENST00000448038 SMAD7O15105 426 aaKnown RBP6.24□□□□□ -1.41
SYNE1-213ENST00000448038 THBDP07204 575 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 USF1P22415 310 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF345Q14585 488 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF788Q6ZQV5 615 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 RPRMLQ8N4K4 120 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 OR52M1Q8NGK5 317 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 IL22RA2Q969J5 263 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 TP53RKQ96S44 253 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 PITPNC1Q9UKF7 332 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 LINC00312Q9Y6C7 94 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 IGKV1-12A0A0C4DH73 117 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 IGKV1D-12P01611 117 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 SFTA3P0C7M3 94 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 CD1BP29016 333 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 RPL35P42766 123 aaKnown RBP6.23□□□□□ -1.41
SYNE1-213ENST00000448038 HSPE1P61604 102 aaKnown RBP6.23□□□□□ -1.41
SYNE1-213ENST00000448038 OR5I1Q13606 314 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 LY6EQ16553 131 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 UQCC3Q6UW78 93 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 ZGRF1Q86YA3 2104 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 SPSB4Q96A44 273 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 SAT2Q96F10 170 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-213ENST00000448038 TRAV24A0A0B4J272 114 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 XKRY2A2RUG3 117 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 PITX3O75364 302 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 ZP1P60852 638 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 H1FOOQ8IZA3 346 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-213ENST00000448038 FAM89BQ8N5H3 189 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 OR4P4Q8NGL7 312 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 CCL3L1P16619 93 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 ATP6V0CP27449 155 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF429Q86V71 674 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 OR5B3Q8NH48 314 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 CHRDL1Q9BU40 450 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 PATZ1Q9HBE1 687 aaKnown RBP6.23□□□□□ -1.41
SYNE1-213ENST00000448038 NPVFQ9HCQ7 196 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 PLSCR2Q9NRY7 297 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 OTX1P32242 354 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-213ENST00000448038 UNQ5815/PRO19632Q6UWF5 114 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 WDR31Q8NA23 367 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 LSM10Q969L4 123 aaKnown RBP6.23□□□□□ -1.41
SYNE1-213ENST00000448038 TMEM167BQ9NRX6 74 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 DPM3Q9P2X0 92 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 FAM90A26D6RGX4 464 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 TNFRSF9Q07011 255 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 KIAA0141Q14154 515 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-213ENST00000448038 PSG5Q15238 335 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 OR8I2Q8N0Y5 310 aa6.23□□□□□ -1.41
SYNE1-213ENST00000448038 IGKV1-27A0A075B6S5 117 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 A0A0A6YYD4 124 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 CEACAM18A8MTB9 384 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 H2BFSP57053 126 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 ERVFC1-1P60608 527 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 CLEC12BQ2HXU8 276 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 C10orf113Q5VZT2 155 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 PDPNQ86YL7 162 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 OR1L6Q8NGR2 347 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 CABLES2Q9BTV7 478 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 RSRP1Q9BUV0 290 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 KBTBD11O94819 623 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 PF4V1P10720 104 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 P2RX4Q99571 388 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 PTPRSQ13332 1948 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 ERVH48-1M5A8F1 160 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 LILRA1O75019 489 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 CXCL2P19875 107 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF672Q499Z4 452 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-213ENST00000448038 IGF2-ASQ6U949 168 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 DHRS11Q6UWP2 260 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF497Q6ZNH5 498 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 BAGE3Q86Y29 109 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 BAGE2Q86Y30 109 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 OR2T10Q8NGZ9 312 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 QTRT1Q9BXR0 403 aaKnown RBP6.22□□□□□ -1.41
SYNE1-213ENST00000448038 SLC35B3Q9H1N7 401 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 GAR1Q9NY12 217 aaKnown RBP6.22□□□□□ -1.41
SYNE1-213ENST00000448038 TCF19Q9Y242 345 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF705FA8MVS1 300 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-213ENST00000448038 SRRM5B3KS81 715 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 IGKV3-15P01624 115 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 SEC11BP0C7V7 166 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF705DP0CH99 300 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF705BP0CI00 300 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-213ENST00000448038 RUNX1Q01196 453 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 DNM1P46Q6ZS02 220 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 USF3Q68DE3 2245 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 IGKV3-7A0A075B6H7 116 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 DPRXA6NFQ7 191 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 CORTO00230 105 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 CHEK1O14757 476 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 CLN5O75503 358 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 RAB4AP20338 218 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 PPOXP50336 477 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 C4orf17Q53FE4 359 aa6.22□□□□□ -1.41
SYNE1-213ENST00000448038 NUP37Q8NFH4 326 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms