RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 OR4C13Q8NGP0 309 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 OR4C46A6NHA9 309 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 SLC25A20O43772 301 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 KLKB1P03952 638 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 CACNG7P62955 275 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 TMEM101Q96IK0 257 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 ZIC1Q15915 447 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 TRBV6-7A0A0A0MS04 114 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 TM4SF5O14894 197 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 HMGA1P17096 107 aaKnown RBP6.24□□□□□ -1.41
VPS53-204ENST00000437048 GPR183P32249 361 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 SNAI3Q3KNW1 292 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 DMRTC1Q5HYR2 192 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 NEGR1Q7Z3B1 354 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.24□□□□□ -1.41
VPS53-204ENST00000437048 EMC6Q9BV81 110 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 USF3Q68DE3 2245 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 NKX2-6A6NCS4 301 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 C1orf61Q13536 156 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 LTC4SQ16873 150 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 ASCL2Q99929 193 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 CEACAM21Q3KPI0 293 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 FBXO46Q6PJ61 603 aaPredicted RBP6.24□□□□□ -1.41
VPS53-204ENST00000437048 HARBI1Q96MB7 349 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 PTPRFP10586 1907 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 LIMS1P48059 325 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 TNFRSF9Q07011 255 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 SP6Q3SY56 376 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 PRDM14Q9GZV8 571 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 NDUFB4O95168 129 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 LGALS1P09382 135 aaKnown RBP6.23□□□□□ -1.41
VPS53-204ENST00000437048 OR3A4PP47883 348 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 HSPE1P61604 102 aaKnown RBP6.23□□□□□ -1.41
VPS53-204ENST00000437048 TUSC5Q8IXB3 177 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 OSR1Q8TAX0 266 aaPredicted RBP6.23□□□□□ -1.41
VPS53-204ENST00000437048 ZNF502Q8TBZ5 544 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 AGMATQ9BSE5 352 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 TMEM208Q9BTX3 173 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 MED13Q9UHV7 2174 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.23□□□□□ -1.41
VPS53-204ENST00000437048 ATOH7Q8N100 152 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 OR4D5Q8NGN0 318 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 GPBAR1Q8TDU6 330 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 AHDC1Q5TGY3 1603 aaPredicted RBP6.23□□□□□ -1.41
VPS53-204ENST00000437048 WDR81Q562E7 1941 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 FNDC10F2Z333 226 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 C3orf80F5H4A9 247 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 FCGR3AP08637 254 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 ZNF880Q6PDB4 577 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 LOC102724200A0A096LPH7 203 aaPredicted RBP6.23□□□□□ -1.41
VPS53-204ENST00000437048 PGPEP1LA6NFU8 196 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 APOMO95445 188 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 UCP1P25874 307 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 ID4P47928 161 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 CHAC1Q9BUX1 264 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 IZUMO1RA6ND01 250 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 CD40P25942 277 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 SSPNQ14714 243 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 VKORC1L1Q8N0U8 176 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 SOSTQ9BQB4 213 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 PAPPA2Q9BXP8 1791 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 UBE2V1Q13404 147 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 FAM222BQ8WU58 562 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 TWSG1Q9GZX9 223 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 SORL1Q92673 2214 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 A0A1W2PP11 408 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 A0A1W2PRE2 83 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 FAM78AQ5JUQ0 283 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 SPRED2Q7Z698 418 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 CCL27Q9Y4X3 112 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 ETHE1O95571 254 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 LYZP61626 148 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 ABHD14AQ9BUJ0 271 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 ZNF324O75467 553 aaPredicted RBP6.23□□□□□ -1.41
VPS53-204ENST00000437048 NXPH3O95157 252 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 SRFP11831 508 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 TBR1Q16650 682 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 HDHD3Q9BSH5 251 aaPredicted RBP6.23□□□□□ -1.41
VPS53-204ENST00000437048 JPT1Q9UK76 154 aa6.23□□□□□ -1.41
VPS53-204ENST00000437048 TMEM8BA6NDV4 472 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 THY1P04216 161 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 CCL20P78556 96 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 ATXN8Q156A1 80 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 LAMTOR1Q6IAA8 161 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 TNFRSF14Q92956 283 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 MED29Q9NX70 200 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 RNF7Q9UBF6 113 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 RNF222A6NCQ9 220 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 CEACAM18A8MTB9 384 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 SPINK2P20155 84 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 B4GALNT1Q00973 533 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 DEFB133Q30KQ1 61 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 RFLNAQ6ZTI6 216 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 MRGPRFQ96AM1 343 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 COX14Q96I36 57 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 MED19A0JLT2 244 aaPredicted RBP6.22□□□□□ -1.41
VPS53-204ENST00000437048 MEX3AA1L020 520 aaKnown RBP6.22□□□□□ -1.41
VPS53-204ENST00000437048 FGF22Q9HCT0 170 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 DNASE2O00115 360 aaPredicted RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms