RNA–Protein interactions for RNA: ENST00000431146.6

USHBP1-203, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2 BASIC

Gene USHBP1, Length 2,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-203ENST00000431146 MARCH11A6NNE9 402 aa13.71□□□□□ -0.21
USHBP1-203ENST00000431146 LRRC10Q5BKY1 277 aa13.71□□□□□ -0.21
USHBP1-203ENST00000431146 SSX9Q7RTT3 188 aa13.71□□□□□ -0.21
USHBP1-203ENST00000431146 VKORC1L1Q8N0U8 176 aa13.71□□□□□ -0.21
USHBP1-203ENST00000431146 RPUSD1Q9UJJ7 312 aaKnown RBP13.71□□□□□ -0.21
USHBP1-203ENST00000431146 MMP9P14780 707 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 RPL35P42766 123 aaKnown RBP13.7□□□□□ -0.22
USHBP1-203ENST00000431146 RAB7AP51149 207 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 H2BFWTQ7Z2G1 175 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 ITLN2Q8WWU7 325 aaPredicted RBP13.7□□□□□ -0.22
USHBP1-203ENST00000431146 TMEM68Q96MH6 324 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 LINC00574Q9H8X3 128 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 TAS2R3Q9NYW6 316 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 USP24Q9UPU5 2620 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 RAB19A4D1S5 217 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 NUPL2O15504 423 aaKnown RBP13.7□□□□□ -0.22
USHBP1-203ENST00000431146 MED6O75586 246 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 RPL23AP62750 156 aaKnown RBP13.7□□□□□ -0.22
USHBP1-203ENST00000431146 MIDNQ504T8 468 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 C4orf17Q53FE4 359 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 SPINK9Q5DT21 86 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 R3HDM4Q96D70 268 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 ZNF714Q96N38 554 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 RAB40CQ96S21 281 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 PSENENQ9NZ42 101 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 LPAR3Q9UBY5 353 aa13.7□□□□□ -0.22
USHBP1-203ENST00000431146 RAB29O14966 203 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 RBMXL2O75526 392 aaKnown RBP13.69□□□□□ -0.22
USHBP1-203ENST00000431146 SOD3P08294 240 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 FGF2P09038 288 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 AKR1D1P51857 326 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 UBE2KP61086 200 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 MRPS11P82912 194 aaKnown RBP13.69□□□□□ -0.22
USHBP1-203ENST00000431146 MEF2CQ06413 473 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-203ENST00000431146 TNFRSF9Q07011 255 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 AVPI1Q5T686 147 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 TCTEX1D1Q8N7M0 179 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 LINC00052Q96N35 136 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 ZNF251Q9BRH9 671 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 ARV1Q9H2C2 271 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 GAL3ST2Q9H3Q3 398 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 RBKSQ9H477 322 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 A0A1W2PPR1 153 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 TXNL1O43396 289 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 EIF5AL1Q6IS14 154 aaKnown RBP13.69□□□□□ -0.22
USHBP1-203ENST00000431146 S1PR3Q99500 378 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 GINS3Q9BRX5 216 aa13.69□□□□□ -0.22
USHBP1-203ENST00000431146 ASH1LQ9NR48 2969 aaKnown RBP13.68□□□□□ -0.22
USHBP1-203ENST00000431146 MALRD1Q5VYJ5 2156 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 KRBOX1C9JBD0 128 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 ITGB1BP1O14713 200 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 OR9G9P0C7N8 305 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 METTL15P1P0C7V9 234 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 OR2B8PP59922 312 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 SPANXN5Q5MJ07 72 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 HSD17B13Q7Z5P4 300 aaPredicted RBP13.68□□□□□ -0.22
USHBP1-203ENST00000431146 CD300LFQ8TDQ1 290 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 ZDHHC16Q969W1 377 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 HRH4Q9H3N8 390 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.68□□□□□ -0.22
USHBP1-203ENST00000431146 FAM212BQ9NTI7 297 aaPredicted RBP13.68□□□□□ -0.22
USHBP1-203ENST00000431146 WSB1Q9Y6I7 421 aa13.68□□□□□ -0.22
USHBP1-203ENST00000431146 SPTAN1Q13813 2472 aaKnown RBP13.68□□□□□ -0.22
USHBP1-203ENST00000431146 TET2Q6N021 2002 aaPredicted RBP13.68□□□□□ -0.22
USHBP1-203ENST00000431146 A8MXK9 166 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 ATG12O94817 140 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 SULT1A2P50226 295 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 PPOXP50336 477 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 SLC25A48Q6ZT89 311 aaKnown RBP13.67□□□□□ -0.22
USHBP1-203ENST00000431146 FAM216AQ8WUB2 273 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 DDB2Q92466 427 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 KAAG1Q9UBP8 84 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 HSPB7Q9UBY9 170 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 SESN1Q9Y6P5 492 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 AKAP6Q13023 2319 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 C19orf84I3L1E1 186 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 C1QL1O75973 258 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 HPRT1P00492 218 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 IFNA4P05014 189 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 SMIM6P0DI80 62 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 SPP1P10451 314 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 FHITP49789 147 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 AKR1C1Q04828 323 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 BAXQ07812 192 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 ARL16Q0P5N6 197 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 HEPN1Q6WQI6 88 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 ZNF383Q8NA42 475 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 GSN-AS1Q9NRJ2 163 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 CBLN4Q9NTU7 201 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 LAMP3Q9UQV4 416 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 ZFYVE26Q68DK2 2539 aa13.67□□□□□ -0.22
USHBP1-203ENST00000431146 SULT1A1P50225 295 aa13.66□□□□□ -0.22
USHBP1-203ENST00000431146 SMIM8Q96KF7 97 aa13.66□□□□□ -0.22
USHBP1-203ENST00000431146 QTRT1Q9BXR0 403 aaKnown RBP13.66□□□□□ -0.22
USHBP1-203ENST00000431146 FLNCQ14315 2725 aa13.66□□□□□ -0.22
USHBP1-203ENST00000431146 DLX1P56177 255 aa13.66□□□□□ -0.22
USHBP1-203ENST00000431146 RPS16P62249 146 aaKnown RBP13.66□□□□□ -0.22
USHBP1-203ENST00000431146 RUNX1Q01196 453 aa13.66□□□□□ -0.22
USHBP1-203ENST00000431146 ZNF266Q14584 549 aa13.66□□□□□ -0.22
USHBP1-203ENST00000431146 TMEM182Q6ZP80 229 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms