RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 CST9LP1Q5W188 147 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 SMIM15Q7Z3B0 74 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 NIT1Q86X76 327 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 MUC15Q8N387 334 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 APOBEC3DQ96AK3 386 aaPredicted RBP4.33□□□□□ -1.72
RIF1-203ENST00000428287 RBM24Q9BX46 236 aaKnown RBP4.33□□□□□ -1.72
RIF1-203ENST00000428287 KCNIP2Q9NS61 270 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 IGLC7A0M8Q6 106 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 DIRC3C9JPN6 131 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 FCGR2AP12318 317 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 TNFRSF4P43489 277 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 GNB1P62873 340 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 PIGYQ3MUY2 71 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 TMEM196Q5HYL7 178 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 NFAM1Q8NET5 270 aaPredicted RBP4.33□□□□□ -1.72
RIF1-203ENST00000428287 OCC1Q8TAD7 63 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 LMX1AQ8TE12 382 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 LIN37Q96GY3 246 aaPredicted RBP4.33□□□□□ -1.72
RIF1-203ENST00000428287 IL36BQ9NZH7 164 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 HS3ST3A1Q9Y663 406 aa4.33□□□□□ -1.72
RIF1-203ENST00000428287 C11orf94C9JXX5 98 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 TNFSF15O95150 251 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 HLA-DQA1P01909 254 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 SCTP09683 121 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 AREGP15514 252 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 COX5AP20674 150 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 HNF1AP20823 631 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 TNFSF4P23510 183 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 SNAI3Q3KNW1 292 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 UFSP1Q6NVU6 142 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 ZNF321PQ8N8H1 164 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 PGAM5Q96HS1 289 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 LRFN3Q9BTN0 628 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 LSM4Q9Y4Z0 139 aaKnown RBP4.32□□□□□ -1.72
RIF1-203ENST00000428287 H0Y8X5 98 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 TNFSF11O14788 317 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 PGLYRP1O75594 196 aaPredicted RBP4.32□□□□□ -1.72
RIF1-203ENST00000428287 UNQ5815/PRO19632Q6UWF5 114 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 SPTSSAQ969W0 71 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 ZDHHC11Q9H8X9 412 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 CACNG5Q9UF02 275 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 ZNF205O95201 554 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 C3orf79P0CE67 100 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 IGLC1P0CG04 106 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 IL12BP29460 328 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 SRD5A2P31213 254 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 FGF8P55075 233 aaPredicted RBP4.32□□□□□ -1.72
RIF1-203ENST00000428287 ZXDAP98168 799 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 ZNF324BQ6AW86 544 aaPredicted RBP4.32□□□□□ -1.72
RIF1-203ENST00000428287 WDR31Q8NA23 367 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 OR5A2Q8NGI9 324 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 OR10G6Q8NH81 332 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 ZNF160Q9HCG1 818 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 OR5B21A6NL26 309 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 SIRPB1O00241 398 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 STAG3L2P0CL84 134 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 STAG3L3P0CL85 134 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 TMEM11P17152 192 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 ADMP35318 185 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 CLDN17P56750 224 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 LHFPL2Q6ZUX7 228 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 SFTPA2Q8IWL1 248 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 OR10G9Q8NGN4 311 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 DNAJA3Q96EY1 480 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 CLEC7AQ9BXN2 247 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 PIGLQ9Y2B2 252 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 TEP1Q99973 2627 aaKnown RBP4.32□□□□□ -1.72
RIF1-203ENST00000428287 A0A1W2PS18 150 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 C5orf67F2Z3F1 127 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 GALR2O43603 387 aaPredicted RBP4.32□□□□□ -1.72
RIF1-203ENST00000428287 IGHEP01854 428 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 CAPZBP47756 277 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 DLX2Q07687 328 aaPredicted RBP4.32□□□□□ -1.72
RIF1-203ENST00000428287 EIF4EBP1Q13541 118 aaPredicted RBP4.32□□□□□ -1.72
RIF1-203ENST00000428287 C12orf54Q6X4T0 127 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 WIPF2Q8TF74 440 aaPredicted RBP4.32□□□□□ -1.72
RIF1-203ENST00000428287 MBD6Q96DN6 1003 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 OSTCQ9NRP0 149 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 POLR1DQ9Y2S0 133 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 UNC79Q9P2D8 2635 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 TRAV9-2A0A087WT02 112 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 SYNGR3O43761 229 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 HHEXQ03014 270 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 SMIM12Q96EX1 92 aa4.32□□□□□ -1.72
RIF1-203ENST00000428287 GRIFINA4D1Z8 144 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 ISLRO14498 428 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 OR2J3O76001 311 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 SERPINE2P07093 398 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 PDCD1Q15116 288 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 ST6GALNAC3Q8NDV1 305 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 GNB4Q9HAV0 340 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 CLN8Q9UBY8 286 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 ZNF891A8MT65 544 aaPredicted RBP4.31□□□□□ -1.72
RIF1-203ENST00000428287 ZNF705FA8MVS1 300 aaPredicted RBP4.31□□□□□ -1.72
RIF1-203ENST00000428287 NDUFB4O95168 129 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 C1QTNF9P0C862 333 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 ZNF705DP0CH99 300 aaPredicted RBP4.31□□□□□ -1.72
RIF1-203ENST00000428287 ZNF705BP0CI00 300 aaPredicted RBP4.31□□□□□ -1.72
RIF1-203ENST00000428287 IGLL1P15814 213 aa4.31□□□□□ -1.72
RIF1-203ENST00000428287 KITLGP21583 273 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms