RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LIN54Q6MZP7 749 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 GLDNQ6ZMI3 551 aaPredicted RBP8.15□□□□□ -1.1
CD44-207ENST00000425428 LIAT1Q6ZQX7 453 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 Q71RC1 249 aaPredicted RBP8.15□□□□□ -1.1
CD44-207ENST00000425428 LYG2Q86SG7 212 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 ADAD2Q8NCV1 583 aaKnown RBP8.15□□□□□ -1.1
CD44-207ENST00000425428 OR8H1Q8NGG4 311 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 GALNT14Q96FL9 552 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 HARBI1Q96MB7 349 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 BEX1Q9HBH7 125 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 COMMD9Q9P000 198 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 FLVCR2Q9UPI3 526 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 AKAP9Q99996 3911 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 IGHV3-72A0A0B4J1Y9 119 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 A0A1W2PPI3 338 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 NCBP2LA6PVI3 153 aaKnown RBP8.15□□□□□ -1.11
CD44-207ENST00000425428 VGLL3A8MV65 326 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 H0YJW9 148 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 M0QZK8 103 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 SSNA1O43805 119 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 SFT2D2O95562 160 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 IGLV2-14P01704 120 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 IL5P05113 134 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 SNRNP70P08621 437 aaKnown RBP8.15□□□□□ -1.11
CD44-207ENST00000425428 OR5AC1P0C628 307 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 NQO2P16083 231 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 LPAR6P43657 344 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 SLC9A3R2Q15599 337 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 C16orf82Q7Z2V1 217 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 ZNF383Q8NA42 475 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 UXS1Q8NBZ7 420 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 CHPT1Q8WUD6 406 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 TMEM222Q9H0R3 208 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 PLEKHA2Q9HB19 425 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 CACFD1Q9UGQ2 172 aa8.15□□□□□ -1.11
CD44-207ENST00000425428 DUXBA0A1W2PPF3 345 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 LINC00473A8K010 186 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 SNRPGP15A8MWD9 76 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 INAFM1C9JVW0 142 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 H3BUX3 64 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 RBMXL2O75526 392 aaKnown RBP8.14□□□□□ -1.11
CD44-207ENST00000425428 SNAPC5O75971 98 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 ACTL6BO94805 426 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 DUS4LO95620 317 aaKnown RBP8.14□□□□□ -1.11
CD44-207ENST00000425428 FAM157CP0CG43 387 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 DHRS2Q13268 280 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 PPP1R1AQ13522 171 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 DIAPH2-AS1Q14236 149 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 OXA1LQ15070 435 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 H2BFWTQ7Z2G1 175 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 TMEM86BQ8N661 226 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 ZNF431Q8TF32 576 aaPredicted RBP8.14□□□□□ -1.11
CD44-207ENST00000425428 RBPMSQ93062 196 aaKnown RBP8.14□□□□□ -1.11
CD44-207ENST00000425428 IL22RA2Q969J5 263 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 MRGPRFQ96AM1 343 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 GSX1Q9H4S2 264 aaPredicted RBP8.14□□□□□ -1.11
CD44-207ENST00000425428 POMT1Q9Y6A1 747 aa8.14□□□□□ -1.11
CD44-207ENST00000425428 OTOGQ6ZRI0 2925 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 C9orf170A2RU37 121 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 VENTXO95231 258 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 SPDEFO95238 335 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 CRYBA1P05813 215 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 UCP1P25874 307 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 MECP2P51608 486 aaKnown RBP8.13□□□□□ -1.11
CD44-207ENST00000425428 RPL30P62888 115 aaKnown RBP8.13□□□□□ -1.11
CD44-207ENST00000425428 HNF4GQ14541 408 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 MMDQ15546 238 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 SP6Q3SY56 376 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 TMEM177Q53S58 311 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 TMEM268Q5VZI3 342 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 THOC7Q6I9Y2 204 aaKnown RBP8.13□□□□□ -1.11
CD44-207ENST00000425428 Q6YL49 198 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 FAM219AQ8IW50 185 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 BCL6BQ8N143 479 aaPredicted RBP8.13□□□□□ -1.11
CD44-207ENST00000425428 SIGLECL1Q8N7X8 197 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 R3HDM4Q96D70 268 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 GPHA2Q96T91 129 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 SPIN2AQ99865 258 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 RASL11BQ9BPW5 248 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 SPIN2BQ9BPZ2 258 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 PDCD10Q9BUL8 212 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 F8P00451 2351 aa8.13□□□□□ -1.11
CD44-207ENST00000425428 ZANQ9Y493 2812 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 HABP2Q14520 560 aaPredicted RBP8.12□□□□□ -1.11
CD44-207ENST00000425428 TATDN3Q17R31 274 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 ARSJQ5FYB0 599 aaPredicted RBP8.12□□□□□ -1.11
CD44-207ENST00000425428 C12orf45Q8N5I9 185 aaPredicted RBP8.12□□□□□ -1.11
CD44-207ENST00000425428 C17orf50Q8WW18 174 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 DDB2Q92466 427 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 EAF1Q96JC9 268 aaPredicted RBP8.12□□□□□ -1.11
CD44-207ENST00000425428 TP53RKQ96S44 253 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 FKBP11Q9NYL4 201 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 SONP18583 2426 aaKnown RBP8.12□□□□□ -1.11
CD44-207ENST00000425428 A0A0A6YYJ9 748 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 A0A0B4J2A0 478 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 MARCH11A6NNE9 402 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 NBR2O15453 112 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 PROP1O75360 226 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 CRLF1O75462 422 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 OR2F2O95006 317 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms