RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ARHGDIBP52566 201 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 IAH1Q2TAA2 248 aaPredicted RBP13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 TPTE2P1Q5T6R2 138 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 MINOS1Q5TGZ0 78 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 GPR157Q5UAW9 335 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 HCP5Q6MZN7 132 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 C1orf229Q6ZS94 237 aaPredicted RBP13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 MOB3BQ86TA1 216 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 TCTE3Q8IZS6 198 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 ZNF383Q8NA42 475 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 WFDC11Q8NEX6 87 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 ST6GALNAC6Q969X2 333 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 FYTTD1Q96QD9 318 aaKnown RBP13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 NABP2Q9BQ15 211 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 PLEKHA2Q9HB19 425 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 GSKIPQ9P0R6 139 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 TBL2Q9Y4P3 447 aaKnown RBP13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 MINOS1-NBL1R4GNA1 71 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 PDZD2O15018 2839 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 J3QLI3 93 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 MC5RP33032 325 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 H2BFSP57053 126 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 LINC00205P59089 165 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 ZFP69Q49AA0 526 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 ZNF585BQ52M93 769 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 CCDC144NLQ6NUI1 221 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 DMBX1Q8NFW5 382 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 OR2T35Q8NGX2 323 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 DDB2Q92466 427 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 SEC22AQ96IW7 307 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 C2orf50Q96LR7 162 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 AIFM2Q9BRQ8 373 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 RANBP3Q9H6Z4 567 aaPredicted RBP13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 WASHC3Q9Y3C0 194 aa13.9□□□□□ -0.19
CCDC28B-202ENST00000421922 SETD2Q9BYW2 2564 aaPredicted RBP13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 PRRC2AP48634 2157 aaKnown RBP13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 OR2A4O95047 310 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 HRASP01112 189 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 KRASP01116 189 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 IGHV4-31P0DP07 118 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 CYB5R2Q6BCY4 276 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 PDPNQ86YL7 162 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 OR8H3Q8N146 312 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 LSM10Q969L4 123 aaKnown RBP13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 R3HDM4Q96D70 268 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 OR2A7Q96R45 310 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 NMES1Q9C002 83 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 ITGB1BP2Q9UKP3 347 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 HILPDAQ9Y5L2 63 aa13.89□□□□□ -0.19
CCDC28B-202ENST00000421922 CCDC168Q8NDH2 2452 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 ITPR3Q14573 2671 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 CELSR1Q9NYQ6 3014 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 TRAV40A0A0B4J280 105 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 IGHV1-3A0A0C4DH29 117 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 OOSP1A8MZH6 123 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 H0YJW9 148 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 NPFFO15130 113 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 NQO2P16083 231 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 G6PCP35575 357 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 CD300CQ08708 224 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 FGL1Q08830 312 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 DIAPH2-AS1Q14236 149 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 MIDNQ504T8 468 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 H2BFWTQ7Z2G1 175 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 FAM219AQ8IW50 185 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 OR5AN1Q8NGI8 311 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 OR10C1Q96KK4 312 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 MMP24Q9Y5R2 645 aa13.88□□□□□ -0.19
CCDC28B-202ENST00000421922 MARCH11A6NNE9 402 aa13.87□□□□□ -0.19
CCDC28B-202ENST00000421922 SMAD7O15105 426 aaKnown RBP13.87□□□□□ -0.19
CCDC28B-202ENST00000421922 SHOXO15266 292 aa13.87□□□□□ -0.19
CCDC28B-202ENST00000421922 SCGB1D2O95969 90 aa13.87□□□□□ -0.19
CCDC28B-202ENST00000421922 IGKV1-39P01597 117 aa13.87□□□□□ -0.19
CCDC28B-202ENST00000421922 IGKV1D-39P04432 117 aa13.87□□□□□ -0.19
CCDC28B-202ENST00000421922 ZBTB8BQ8NAP8 495 aaPredicted RBP13.87□□□□□ -0.19
CCDC28B-202ENST00000421922 OR1S1Q8NH92 325 aa13.87□□□□□ -0.19
CCDC28B-202ENST00000421922 OSR1Q8TAX0 266 aaPredicted RBP13.87□□□□□ -0.19
CCDC28B-202ENST00000421922 FLYWCH2Q96CP2 140 aaKnown RBP13.87□□□□□ -0.19
CCDC28B-202ENST00000421922 IGHV1-69DA0A0B4J2H0 117 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 CENPVL3A0A0U1RRI6 287 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 MPTX1A8MV57 137 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 LY6LH3BQJ8 138 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 RBMXL2O75526 392 aaKnown RBP13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 IGHV1-69P01742 117 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 PET100P0DJ07 73 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 S100A10P60903 97 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 SMCO1Q147U7 214 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 SSX2Q16385 188 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 LRRC37A5PQ49AS3 106 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 NMSQ5H8A3 153 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 SSX9Q7RTT3 188 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 LHFPL4Q7Z7J7 247 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 OR4C13Q8NGP0 309 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 HARBI1Q96MB7 349 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 ZFP57Q9NU63 452 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 HIVEP1P15822 2718 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 CSMD2Q7Z408 3487 aa13.86□□□□□ -0.19
CCDC28B-202ENST00000421922 ZFHX3Q15911 3703 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 IGHV3OR16-10A0A075B7F0 116 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 IGHV3-72A0A0B4J1Y9 119 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms