RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 PMP2P02689 132 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 CD3DP04234 171 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 OR5H8P0DN80 308 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 IGHV3-43DP0DP04 118 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 RFX2P48378 723 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 DYRK1AQ13627 763 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 TRIQKQ629K1 86 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 STEAP1BQ6NZ63 245 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 DHRS11Q6UWP2 260 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 MOB3BQ86TA1 216 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 LINC00311Q8N616 119 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 Q8N6K4 173 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 C8orf31Q8N9H6 132 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 GIMAP1Q8WWP7 306 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 CREB3L1Q96BA8 519 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 PLSCR3Q9NRY6 295 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 SLC23A1Q9UHI7 598 aa10.06□□□□□ -0.8
LINC00339-202ENST00000416769 IGHV1-3A0A0C4DH29 117 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 NCBP2LA6PVI3 153 aaKnown RBP10.05□□□□□ -0.8
LINC00339-202ENST00000416769 J3QRK9 145 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 SLC31A2O15432 143 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 RAMP3O60896 148 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 RAB3DO95716 219 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 AKAIN1P0CW23 69 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 IL7P13232 177 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 HRH1P35367 487 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 INPP1P49441 399 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 SLC35B1P78383 322 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 CFHR3Q02985 330 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 KLF9Q13886 244 aaPredicted RBP10.05□□□□□ -0.8
LINC00339-202ENST00000416769 MEF2DQ14814 521 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 RNASE10Q5GAN6 216 aaKnown RBP10.05□□□□□ -0.8
LINC00339-202ENST00000416769 FOXRED2Q8IWF2 684 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 H1FOOQ8IZA3 346 aaPredicted RBP10.05□□□□□ -0.8
LINC00339-202ENST00000416769 OR5M8Q8NGP6 311 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 MUC7Q8TAX7 377 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 EDARADDQ8WWZ3 215 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 OR5B12Q96R08 314 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 GINS4Q9BRT9 223 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 GNB4Q9HAV0 340 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 EHFQ9NZC4 300 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 OR1A1Q9P1Q5 309 aa10.05□□□□□ -0.8
LINC00339-202ENST00000416769 AMMECR1Q9Y4X0 333 aaPredicted RBP10.05□□□□□ -0.8
LINC00339-202ENST00000416769 HYDINQ4G0P3 5121 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 TUSC2O75896 110 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 LY86O95711 162 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 IFNA6P05013 189 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 FCGR2CP31995 323 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 PPP1CCP36873 323 aaKnown RBP10.04□□□□□ -0.8
LINC00339-202ENST00000416769 ZNF134P52741 427 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 TSPAN5P62079 268 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 DCTN2Q13561 401 aaKnown RBP10.04□□□□□ -0.8
LINC00339-202ENST00000416769 FHL3Q13643 280 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 GNMTQ14749 295 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 C9orf66Q5T8R8 295 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 ZNF57Q68EA5 555 aaPredicted RBP10.04□□□□□ -0.8
LINC00339-202ENST00000416769 TEX38Q6PEX7 206 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 TMEM17Q86X19 198 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 ZNF439Q8NDP4 499 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 OR10V1Q8NGI7 309 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 OR10X1Q8NGY0 326 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 OR6F1Q8NGZ6 308 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 OR8U1Q8NH10 309 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 RCHY1Q96PM5 261 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 TINAGL1Q9GZM7 467 aaPredicted RBP10.04□□□□□ -0.8
LINC00339-202ENST00000416769 C11orf54Q9H0W9 315 aaPredicted RBP10.04□□□□□ -0.8
LINC00339-202ENST00000416769 KLK15Q9H2R5 256 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 GHITMQ9H3K2 345 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 RDH8Q9NYR8 311 aa10.04□□□□□ -0.8
LINC00339-202ENST00000416769 ZNF256Q9Y2P7 627 aaPredicted RBP10.04□□□□□ -0.8
LINC00339-202ENST00000416769 DISC1C4P0D8 188 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 M0QYG6 137 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 AP4M1O00189 453 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 UPK1BO75841 260 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 ZNF735P0CB33 412 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 NFYAP23511 347 aaPredicted RBP10.03□□□□□ -0.8
LINC00339-202ENST00000416769 FAUP35544 74 aaKnown RBP10.03□□□□□ -0.8
LINC00339-202ENST00000416769 RAB7AP51149 207 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 F2RL1P55085 397 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 KIAA0141Q14154 515 aaPredicted RBP10.03□□□□□ -0.8
LINC00339-202ENST00000416769 EBI3Q14213 229 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 CT45A1Q5HYN5 189 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 CXorf66Q5JRM2 361 aaPredicted RBP10.03□□□□□ -0.8
LINC00339-202ENST00000416769 ZNF660Q6AZW8 331 aaPredicted RBP10.03□□□□□ -0.8
LINC00339-202ENST00000416769 ZFAND6Q6FIF0 208 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 SLC25A48Q6ZT89 311 aaKnown RBP10.03□□□□□ -0.8
LINC00339-202ENST00000416769 OR8H3Q8N146 312 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 ARRDC1Q8N5I2 433 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 COMMD1Q8N668 190 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 OR4C16Q8NGL9 310 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 CT45A3Q8NHU0 189 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 C7orf50Q9BRJ6 194 aaKnown RBP10.03□□□□□ -0.8
LINC00339-202ENST00000416769 ALX4Q9H161 411 aaPredicted RBP10.03□□□□□ -0.8
LINC00339-202ENST00000416769 HRASLSQ9HDD0 168 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 GAB2Q9UQC2 676 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 OR2W1Q9Y3N9 320 aa10.03□□□□□ -0.8
LINC00339-202ENST00000416769 NAP1L6A6NFF2 107 aa10.02□□□□□ -0.81
LINC00339-202ENST00000416769 CENPXA8MT69 81 aa10.02□□□□□ -0.81
LINC00339-202ENST00000416769 SLC6A1P30531 599 aa10.02□□□□□ -0.81
LINC00339-202ENST00000416769 CDX1P47902 265 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms