RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TSSK6Q9BXA6 273 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 CHST5Q9GZS9 411 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 PORCNQ9H237 461 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 C1orf198Q9H425 327 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 SPACA1Q9HBV2 294 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 TMEM100Q9NV29 134 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 OPN4Q9UHM6 478 aa2.84□□□□□ -1.95
VPS54-204ENST00000416400 CHD1O14646 1710 aa2.84□□□□□ -1.96
VPS54-204ENST00000416400 MARF1Q9Y4F3 1742 aaKnown RBP2.84□□□□□ -1.96
VPS54-204ENST00000416400 A0A1B0GUL6 1792 aa2.84□□□□□ -1.96
VPS54-204ENST00000416400 TJP1Q07157 1748 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 A0A087WUJ7 227 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 FXYD6-FXYD2A0A087WZ82 144 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 OR2AT4A6NND4 320 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 ZNF593O00488 134 aaPredicted RBP2.83□□□□□ -1.96
VPS54-204ENST00000416400 DLEU1O43261 78 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 ZNF207O43670 478 aaKnown RBP2.83□□□□□ -1.96
VPS54-204ENST00000416400 ZNF324O75467 553 aaPredicted RBP2.83□□□□□ -1.96
VPS54-204ENST00000416400 CBR3O75828 277 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 CD8AP01732 235 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 IGHV3-11P01762 117 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 OR5AC1P0C628 307 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 MUC1P15941 1255 aaPredicted RBP2.83□□□□□ -1.96
VPS54-204ENST00000416400 NQO2P16083 231 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 ZNF25P17030 456 aaPredicted RBP2.83□□□□□ -1.96
VPS54-204ENST00000416400 HLA-GP17693 338 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 GNG10P50151 68 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 ARF6P62330 175 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 SLC35A1P78382 337 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 SIGLEC14Q08ET2 396 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 LINC00483Q53H64 154 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 MESTQ5EB52 335 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 FAM74A1Q5RGS3 127 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 C9orf64Q5T6V5 341 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 C12orf73Q69YU5 71 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 RPL22L1Q6P5R6 122 aaKnown RBP2.83□□□□□ -1.96
VPS54-204ENST00000416400 SMIM5Q71RC9 77 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 MDP1Q86V88 176 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 TRAPPC5Q8IUR0 188 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 ZNF695Q8IW36 515 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 BAP18Q8IXM2 172 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 TMEM256Q8N2U0 113 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 OR5B17Q8NGF7 314 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 OR8J2Q8NGG1 315 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 UBA3Q8TBC4 463 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 RNASEH2CQ8TDP1 164 aaKnown RBP2.83□□□□□ -1.96
VPS54-204ENST00000416400 THEM6Q8WUY1 208 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 SMIM4Q8WVI0 70 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 TNFAIP8L1Q8WVP5 186 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 C22orf15Q8WYQ4 148 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 FRZBQ92765 325 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 HIST1H2BAQ96A08 127 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 BTF3L4Q96K17 158 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 TEX37Q96LM6 180 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 FAM19A4Q96LR4 140 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 STACQ99469 402 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 SULT4A1Q9BR01 284 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 ZNF471Q9BX82 626 aaPredicted RBP2.83□□□□□ -1.96
VPS54-204ENST00000416400 FXYD6Q9H0Q3 95 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 HRASLSQ9HDD0 168 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 SIRT7Q9NRC8 400 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 UBQLN4Q9NRR5 601 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 LYRM2Q9NU23 88 aaPredicted RBP2.83□□□□□ -1.96
VPS54-204ENST00000416400 GNG8Q9UK08 70 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 DKKL1Q9UK85 242 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 PCTPQ9UKL6 214 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 ANGPT4Q9Y264 503 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 SLC35A3Q9Y2D2 325 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 SIGLEC9Q9Y336 463 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 KLF12Q9Y4X4 402 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 SNX10Q9Y5X0 201 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 ENPP4Q9Y6X5 453 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 TNS2Q63HR2 1409 aa2.83□□□□□ -1.96
VPS54-204ENST00000416400 NUP214P35658 2090 aaPredicted RBP2.83□□□□□ -1.96
VPS54-204ENST00000416400 USP54Q70EL1 1684 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 KIF13AQ9H1H9 1805 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 KIF13BQ9NQT8 1826 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 IGLV4-60A0A075B6I1 120 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 IGKV1-27A0A075B6S5 117 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 A0A087WWC5 75 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 TMEM269A0A1B0GVZ9 245 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 C5orf63A6NC05 138 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 TVP23AA6NH52 213 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 OR5H14A6NHG9 310 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 OR5H1A6NKK0 313 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 A8MWP6 167 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 B4DEV8 164 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 LINC01619G3V211 115 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 GPR31O00270 319 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 BHLHE40O14503 412 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 MFSD11O43934 449 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 SIX6O95475 246 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 CD5P06127 495 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 GUSBP08236 651 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 PET100P0DJ07 73 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 APLNRP35414 380 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 OPRK1P41145 380 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 CXCL12P48061 93 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 TTPAP49638 278 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 ZNF140P52738 457 aaPredicted RBP2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms