RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RBMY1EA6NEQ0 496 aaKnown RBP5.24□□□□□ -1.57
SCN1A-203ENST00000409050 MARCH11A6NNE9 402 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 CD5P06127 495 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 RBMY1DP0C7P1 496 aaKnown RBP5.24□□□□□ -1.57
SCN1A-203ENST00000409050 RBMY1A1P0DJD3 496 aaKnown RBP5.24□□□□□ -1.57
SCN1A-203ENST00000409050 RBMY1CP0DJD4 496 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 NPPCP23582 126 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 CSRP3P50461 194 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM101Q96IK0 257 aa5.24□□□□□ -1.57
SCN1A-203ENST00000409050 MRPL13Q9BYD1 178 aaKnown RBP5.24□□□□□ -1.57
SCN1A-203ENST00000409050 A0A0J9YW62 118 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 DPRXA6NFQ7 191 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 LINC00271P0C7V0 271 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 EFNB2P52799 333 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 FAM57AQ8TBR7 257 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 NEU4Q8WWR8 484 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-203ENST00000409050 KCNS1Q96KK3 526 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 NABP2Q9BQ15 211 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 OVOL2Q9BRP0 275 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 DLEC1Q9Y238 1755 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 FAM90A27PA6NNH2 459 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 CITO14578 2027 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 MYOGP15173 224 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 ALKBH6Q3KRA9 238 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 FHL5Q5TD97 284 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 ZNF841Q6ZN19 808 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 MS4A6AQ9H2W1 248 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 WBP1LQ9NX94 342 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 AUP1Q9Y679 476 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 LOC107984156A0A0G2JMH3 177 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 IZUMO1RA6ND01 250 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 SYNGR3O43761 229 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 GDF9O60383 454 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 SRSF5Q13243 272 aaKnown RBP5.23□□□□□ -1.57
SCN1A-203ENST00000409050 C2orf83Q53S99 150 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 ARL17AQ8IVW1 177 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 TNFRSF14Q92956 283 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 MRAP2Q96G30 205 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 MS4A3Q96HJ5 214 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 ASCL2Q99929 193 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 PIMREGQ9BSJ6 248 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 C5orf66Q9H5L9 145 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 IQCF6A8MYZ5 107 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 HOXA5P20719 270 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 SRIP30626 198 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 RHOGP84095 191 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 PDCD1Q15116 288 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 SLC25A53Q5H9E4 307 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 C1QL3Q5VWW1 255 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 PMS2CLQ68D20 193 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 PVRIGQ6DKI7 326 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 Q6ZS52 159 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 C10orf126Q8N4M7 172 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 NUDT11Q96G61 164 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 OSTCQ9NRP0 149 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 IL36RNQ9UBH0 155 aa5.23□□□□□ -1.57
SCN1A-203ENST00000409050 IL11P20809 199 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 RND2P52198 227 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 SEC11AP67812 179 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 EFNB1P98172 346 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 OR10J3Q5JRS4 329 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 PNKDQ8N490 385 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 FAM169BQ8N8A8 192 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 CHCHD1Q96BP2 118 aaKnown RBP5.22□□□□□ -1.57
SCN1A-203ENST00000409050 QSER1Q2KHR3 1735 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 A0A1B0GUT8 65 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 KLF4O43474 513 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 CT83Q5H943 113 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 DCAF12L2Q5VW00 463 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 SDHCQ99643 169 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-203ENST00000409050 IFI27L2Q9H2X8 130 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 MSL2Q9HCI7 577 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 NXT2Q9NPJ8 142 aaKnown RBP5.22□□□□□ -1.57
SCN1A-203ENST00000409050 LY96Q9Y6Y9 160 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 CRXO43186 299 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-203ENST00000409050 WNT5AP41221 380 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 RTP5Q14D33 572 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 TBR1Q16650 682 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 NIT1Q86X76 327 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 PLA2G2FQ9BZM2 168 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 PRDM13Q9H4Q3 707 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 OTORQ9NRC9 128 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 TBL2Q9Y4P3 447 aaKnown RBP5.22□□□□□ -1.57
SCN1A-203ENST00000409050 SIGLEC5O15389 551 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 PEBP1P30086 187 aaKnown RBP5.22□□□□□ -1.57
SCN1A-203ENST00000409050 GLRXP35754 106 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 PDLIM4P50479 330 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 DLX6P56179 175 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 IFITM3Q01628 133 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 FOXC1Q12948 553 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 PRSS8Q16651 343 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 S100A7L2Q5SY68 101 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 DTX1Q86Y01 620 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 OR5P3Q8WZ94 311 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 TLNRD1Q9H1K6 362 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 IGHV3-64DA0A0J9YX35 117 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 A0A1W2PRE2 83 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 C7orf71A4D174 169 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 NPFFO15130 113 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 ARL14EPLP0DKL9 152 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms