RNA–Protein interactions for RNA: ENST00000396854.8

TM9SF1-202, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 1 (best) BASIC

Gene TM9SF1, Length 2,055 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-202ENST00000396854 AWAT1Q58HT5 328 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 ETV3LQ6ZN32 361 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 ZNF818PQ6ZRF7 136 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 NAV2Q8IVL1 2488 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 ZNF565Q8N9K5 539 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 CLDND2Q8NHS1 167 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 PBDC1Q9BVG4 233 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 EIF5A2Q9GZV4 153 aaKnown RBP12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 VPS13CQ709C8 3753 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 IGSF23A1L1A6 192 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 EDDM3BP56851 147 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 HERPUD1Q15011 391 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 CR1LQ2VPA4 569 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 RNF212Q495C1 297 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 Q5PR19 223 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 WDR25Q64LD2 544 aaPredicted RBP12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 KRTAP1-3Q8IUG1 177 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 TPRX1Q8N7U7 411 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 HIST1H2BAQ96A08 127 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 RPS10P5Q9NQ39 176 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 LYRM2Q9NU23 88 aaPredicted RBP12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 CLN8Q9UBY8 286 aa12.22□□□□□ -0.45
TM9SF1-202ENST00000396854 KIAA2026Q5HYC2 2103 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 ITPR2Q14571 2701 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 C7orf77A4D0Y5 90 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 FAM24AA6NFZ4 105 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 NPIPB11E5RHQ5 1161 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 SCTP09683 121 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 MMP9P14780 707 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 UCP1P25874 307 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 RAB5BP61020 215 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 LMO4P61968 165 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 HABP2Q14520 560 aaPredicted RBP12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 TMEM182Q6ZP80 229 aaPredicted RBP12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 RAB39BQ96DA2 213 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 SLC25A31Q9H0C2 315 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 SMDT1Q9H4I9 107 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 OR6C3Q9NZP0 311 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 TRAPPC2LQ9UL33 140 aa12.21□□□□□ -0.45
TM9SF1-202ENST00000396854 TRBV23-1A0A0A0MS06 115 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 IGKV1D-13A0A0B4J2D9 117 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 IGHV4-61A0A0C4DH41 118 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 IGKV1-6A0A0C4DH72 117 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 UMAD1C9J7I0 102 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 IGKV1-13P0DP09 117 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 POLR2GP62487 172 aaKnown RBP eCLIP12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 GNB2P62879 340 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 MEF2CQ06413 473 aaPredicted RBP12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 NMSQ5H8A3 153 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 C2CD4CQ8TF44 421 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 SFT2D1Q8WV19 159 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 IL22RA2Q969J5 263 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 SSBP3Q9BWW4 388 aaPredicted RBP12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 SLC35B3Q9H1N7 401 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 MT-ND4LP03901 98 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 RHEBQ15382 184 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 AKIRIN2Q53H80 203 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 TRAT1Q6PIZ9 186 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 TCF23Q7RTU1 214 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 ZFP82Q8N141 532 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 OR13A1Q8NGR1 328 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 FAM213BQ8TBF2 198 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 CORO2AQ92828 525 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 C12orf57Q99622 126 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 FOXC2Q99958 501 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 DCTN5Q9BTE1 182 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 LINC00312Q9Y6C7 94 aa12.2□□□□□ -0.46
TM9SF1-202ENST00000396854 MALRD1Q5VYJ5 2156 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 A0A096LNT2 108 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 hADV38S2A0JD32 116 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 C1orf196B1AJZ1 125 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 H0Y980 276 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 SSSCA1O60232 199 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 SNRNP70P08621 437 aaKnown RBP12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 VDAC1P21796 283 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 ATP6V0CP27449 155 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 AKR1C3P42330 323 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 RPL31P62899 125 aaKnown RBP12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 C5orf24Q7Z6I8 188 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 TMEM252Q8N6L7 170 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 C8orf46Q8TAG6 207 aa12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 H1FXQ92522 213 aaKnown RBP12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 PRRC2AP48634 2157 aaKnown RBP12.19□□□□□ -0.46
TM9SF1-202ENST00000396854 TRAV39A0A0B4J263 110 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 CGB3P0DN86 165 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 CGB7P0DN87 165 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 PPP1CCP36873 323 aaKnown RBP12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 VAMP2P63027 116 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 ID3Q02535 119 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 BAXQ07812 192 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 CLINT1Q14677 625 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 CXorf66Q5JRM2 361 aaPredicted RBP12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 OR2G3Q8NGZ4 309 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 MRGPRDQ8TDS7 321 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 CCL28Q9NRJ3 127 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 YLPM1P49750 1951 aaKnown RBP12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 ASH1LQ9NR48 2969 aaKnown RBP12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 TRGV10A0A0A0MS01 117 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 BTBD17A6NE02 478 aa12.18□□□□□ -0.46
TM9SF1-202ENST00000396854 KIAA1324LA8MWY0 1029 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms