RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 HMGB3O15347 200 aaKnown RBP8.34□□□□□ -1.07
COL17A1-203ENST00000393211 SPINT2O43291 252 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 RBMXL2O75526 392 aaKnown RBP8.34□□□□□ -1.07
COL17A1-203ENST00000393211 CXorf1O96002 111 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 GRPP07492 148 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 CD46P15529 392 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 YPEL3P61236 119 aaPredicted RBP8.34□□□□□ -1.07
COL17A1-203ENST00000393211 GNB1P62873 340 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 MZT1Q08AG7 82 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 SSX2Q16385 188 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 TMEM164Q5U3C3 297 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 MRPL41Q8IXM3 137 aaKnown RBP8.34□□□□□ -1.07
COL17A1-203ENST00000393211 C11orf53Q8IXP5 236 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 C1orf174Q8IYL3 243 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 ZNF808Q8N4W9 903 aaPredicted RBP8.34□□□□□ -1.07
COL17A1-203ENST00000393211 ZDHHC16Q969W1 377 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 R3HDM4Q96D70 268 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 FER1L6-AS2Q96M78 137 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 TRAPPC1Q9Y5R8 145 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 LY96Q9Y6Y9 160 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 ZNF407Q9C0G0 2248 aa8.34□□□□□ -1.07
COL17A1-203ENST00000393211 TRGV5A0A0B4J1U4 118 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 A0A0U1RQK1 487 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 MDFIC2A0A1B0GVS7 189 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 ZNF320A2RRD8 509 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 C3orf80F5H4A9 247 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 STAG3L2P0CL84 134 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 STAG3L3P0CL85 134 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 CD82P27701 267 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 KIR2DS2P43631 304 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 GABRA2P47869 451 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 SOX8P57073 446 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 AESQ08117 197 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 SMIM21Q3B7S5 101 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 FAM78BQ5VT40 261 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 UNQ6494/PRO21346Q6UXR6 183 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 KLF14Q8TD94 323 aaPredicted RBP8.33□□□□□ -1.08
COL17A1-203ENST00000393211 SFRP2Q96HF1 295 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 OBP2BQ9NPH6 170 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 PLA2G3Q9NZ20 509 aa8.33□□□□□ -1.08
COL17A1-203ENST00000393211 A0A1B0GWJ7 208 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 LINC00473A8K010 186 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 GALR2O43603 387 aaPredicted RBP8.32□□□□□ -1.08
COL17A1-203ENST00000393211 NDUFB4O95168 129 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 MT-CO2P00403 227 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 SPINK2P20155 84 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 KITLGP21583 273 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 OR10J1P30954 320 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 CHRNA7P36544 502 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 ERVFC1-1P60608 527 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 SELENOTP62341 195 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 PAFAH1B2P68402 229 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 TRIP6Q15654 476 aaKnown RBP8.32□□□□□ -1.08
COL17A1-203ENST00000393211 C3AR1Q16581 482 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 C1orf194Q5T5A4 169 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 CST9LP1Q5W188 147 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 BTNL3Q6UXE8 466 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 LINC00696Q6ZRV3 163 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 FAM90A1Q86YD7 464 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 MRGPRDQ8TDS7 321 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 MISP3Q96FF7 219 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 QTRT1Q9BXR0 403 aaKnown RBP8.32□□□□□ -1.08
COL17A1-203ENST00000393211 FKBP11Q9NYL4 201 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 ELOVL5Q9NYP7 299 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 JPT1Q9UK76 154 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 ARL2-SNX15V9GYD0 113 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 KIAA2026Q5HYC2 2103 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 MED12LQ86YW9 2145 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 CNTRLQ7Z7A1 2325 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 TRGV8A0A0C4DH27 118 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 C19orf67A6NJJ6 358 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 PRSS46E5RG02 174 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 FNDC10F2Z333 226 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 C15orf65H3BRN8 121 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 ITGB1BP1O14713 200 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 CELA3BP08861 270 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 ESDP10768 282 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 NDUFB7P17568 137 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 IGHV1-2P23083 117 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 DUTP33316 252 aaKnown RBP8.32□□□□□ -1.08
COL17A1-203ENST00000393211 VDAC2P45880 294 aaPredicted RBP8.32□□□□□ -1.08
COL17A1-203ENST00000393211 ERVK-16P61578 105 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 TLE1Q04724 770 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 FOXF2Q12947 444 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 CR1LQ2VPA4 569 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 ALKBH6Q3KRA9 238 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 TREML4Q6UXN2 200 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 WDR82Q6UXN9 313 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 Q6ZT83 130 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 MYPOPQ86VE0 399 aaPredicted RBP8.32□□□□□ -1.08
COL17A1-203ENST00000393211 C1orf162Q8NEQ5 155 aaPredicted RBP8.32□□□□□ -1.08
COL17A1-203ENST00000393211 OR4A16Q8NH70 328 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 ZDHHC11Q9H8X9 412 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 PSG11Q9UQ72 335 aa8.32□□□□□ -1.08
COL17A1-203ENST00000393211 KIR2DL5BA0A0G2JN68 375 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 KIR2DL5BA0A0G2JPC4 375 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 C9JCJ5 164 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 YPEL1O60688 119 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 IGKV3-15P01624 115 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 OR9G9P0C7N8 305 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms